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BaseInfo

ncRNA ID osa-miR160d-3p
Species Oryza sativa
Class miRNA
Genome position Chr3:32454988-32455129 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 119 - GCGUGCGAGGAGCCAAGCAUG - 139
Stem-loop(if miRNA) GG  A     C       C         CU   -    CU       UCAGU    -    C     ---    C
  GG UAUGC UGGCUCC UGUAUGCCA  CGC GUAG  GCCAAAC     UGAA ACAA UGCCU   UCUC C
  || ||||| ||||||| |||||||||  ||| ||||  |||||||     |||| |||| |||||   |||| G
  CC GUACG ACCGAGG GCGUGCGGU  GCG CAUC  CGGUUUG     GCUU UGUU ACGGA   AGAG G
--  A     A       A         AG   U    -U       --CAU    G    -     CUU    C
Stem-loop sequence GGGGAUAUGCCUGGCUCCCUGUAUGCCACUCGCGUAGCUGCCAAACUCAGUUGAAACAACUGCCUUCUCCCGGCGAGAUUCAGGCAUUGUGUUCGUACGUUUGGCUCUACUGCGGAUGGCGUGCGAGGAGCCAAGCAUGACC

Reference

1 PMID:12101121
"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).