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BaseInfo

ncRNA ID	novel_zma_miR444
Species	Zea mays
Class	miRNA
Genome position	Chr4:12847595-12847734 [-]
Reference genome	RefGen_v4
Source	SRR1583943;SRR1583944;SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647389;SRR2647390;SRR2647467
Length	24
Mature sequence(if miRNA)	117 - AACGUAUCUAAUGCACAUGGAAUU - 140
Stem-loop(if miRNA)	--A         A           U   A         AA      CGA     UUCUAGAGACGUUAGA    ACGUAUCUA UGCACAUGGAA UUU GUGCACAUG  GCAUGU   UUCAG                U    ||||||||| ||||||||||| ||| |||||||||  ||||||   |||||                C    UGUAUAGGU ACGUGUACUUU GAA CACGUGUAC  CGUGUA   AUUUA                U UCC         C           C   A         CA      -UA     GUGGUGAUAGGUAAAG
Stem-loop sequence	AACGUAUCUAAUGCACAUGGAAUUUUAGUGCACAUGAAGCAUGUCGAUUCAGUUCUAGAGACGUUAGAUCUGAAAUGGAUAGUGGUGAUUUAAUAUGUGCACCAUGUGCACAAAGCUUUCAUGUGCACUGGAUAUGUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008679080.2	ncRNA:24   UUA--AGGUACACGUAAUCUAUGCAA   1   |||--|||||||||||||||||=||| targets:2203   AAUCUUCCAUGUGCAUUAGAUAUGUU   2228 Target Full Sequence	1.5	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679083.2	ncRNA:24   UUA--AGGUACACGUAAUCUAUGCAA   1   |||--|||||||||||||||||=||| targets:2194   AAUCUUCCAUGUGCAUUAGAUAUGUU   2219 Target Full Sequence	1.5	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001156255.1	ncRNA:24   UUA--AGGUACACGUAAUCUAUGCAA   1   |||--|||||||||||||||||=||| targets:1804   AAUCUUCCAUGUGCAUUAGAUAUGUU   1829 Target Full Sequence	1.5	Zea mays prolyl carboxypeptidase like protein (LOC100283354), mRNA	NA	coding protein	psRNATarget
EU964441.1	ncRNA:24   UUA--AGGUACACGUAAUCUAUGCAA   1   |||--|||||||||||||||||=||| targets:1804   AAUCUUCCAUGUGCAUUAGAUAUGUU   1829 Target Full Sequence	1.5	Zea mays clone 278922 prolyl carboxypeptidase like protein mRNA, complete cds	NA	coding protein	psRNATarget
BT024005.1	ncRNA:24   UUA--AGGUACACGUAAUCUAUGCAA   1   |||--|||||||||||||||||=||| targets:1507   AAUCUUCCAUGUGCAUUAGAUAUGUU   1532 Target Full Sequence	1.5	Zea mays clone EL01N0403G06 mRNA sequence	NA	coding protein	psRNATarget
BT018927.1	ncRNA:24   UUA--AGGUACACGUAAUCUAUGCAA   1   |||--|||||||||||||||||=||| targets:1226   AAUCUUCCAUGUGCAUUAGAUAUGUU   1251 Target Full Sequence	1.5	Zea mays clone Contig55.F mRNA sequence	NA	coding protein	psRNATarget
BT087938.1	ncRNA:24   UUA--AGGUACACGUAAUCUAUGCAA   1   |||--|||||||||||||||||=||| targets:1046   AAUCUUCCAUGUGCAUUAGAUAUGUU   1071 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT037068.1	ncRNA:24   UUA--AGGUACACGUAAUCUAUGCAA   1   |||--|||||||||||||||||=||| targets:1081   AAUCUUCCAUGUGCAUUAGAUAUGUU   1106 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds	NA	coding protein	psRNATarget
AY109321.1	ncRNA:24   UUA--AGGUACACGUAAUCUAUGCAA   1   |||--|=|||||||||||||||=||| targets:1013   AAUCUUUCAUGUGCAUUAGAUAUGUU   1038 Target Full Sequence	1.5	Zea mays PCO070230 mRNA sequence	NA	coding protein	psRNATarget