Search result

BaseInfo

ncRNA ID novel_zma_miR440
Species Zea mays
Class miRNA
Genome position Chr7:178110428-178110557 [-]
Reference genome RefGen_v4
Source SRR2089709
Length 24
Mature sequence(if miRNA) 1 - CGUUUUAGGGGAACUGUUGGAGAC - 24
Stem-loop(if miRNA) --        AA            --ACA    G    U    AG CA    AAC  A        A
  CUCCAACA  UCCCUUAAAGCG     AAUU UUUC GUGG  C  AAAA   CC UCAUUUGU G
  ||||||||  ||||||||||||     |||| |||| ||||  |  ||||   || ||||||||
  GAGGUUGU  AGGGGAUUUUGC     UUGA AAAG UAUC  G  UUUU   GG AGUAAACA C
CA        CA            GAGAG    A    -    GA AA    GAU  -        U
Stem-loop sequence CUCCAACAAAUCCCUUAAAGCGACAAAUUGUUUCUGUGGAGCCAAAAAAACCCAUCAUUUGUAGCUACAAAUGAGGUAGUUUUAAGAGCUAUGAAAAAGUUGAGAGCGUUUUAGGGGAACUGUUGGAGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ050474.1
ncRNA:24   CAGAGGUUGUCAAGGGGAUUUUGC   1
  |||||||||||||||||||||=||
targets:233   GUCUCCAACAGUUCCCCUAAAGCG   256

1.5 TSA: Zea mays contig51594, mRNA sequence NA coding protein psRNATarget