ncRNA ID | novel_zma_miR440 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr7:178110428-178110557 [-] |
Reference genome | RefGen_v4 |
Source | SRR2089709 |
Length | 24 |
Mature sequence(if miRNA) | 1 - CGUUUUAGGGGAACUGUUGGAGAC - 24 |
Stem-loop(if miRNA) |
--        AA            --ACA    G    U    AG CA    AAC  A        A   CUCCAACA  UCCCUUAAAGCG     AAUU UUUC GUGG  C  AAAA   CC UCAUUUGU G   ||||||||  ||||||||||||     |||| |||| ||||  |  ||||   || ||||||||   GAGGUUGU  AGGGGAUUUUGC     UUGA AAAG UAUC  G  UUUU   GG AGUAAACA C CA        CA            GAGAG    A    -    GA AA    GAU  -        U |
Stem-loop sequence | CUCCAACAAAUCCCUUAAAGCGACAAAUUGUUUCUGUGGAGCCAAAAAAACCCAUCAUUUGUAGCUACAAAUGAGGUAGUUUUAAGAGCUAUGAAAAAGUUGAGAGCGUUUUAGGGGAACUGUUGGAGAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ050474.1 |
|
1.5 | TSA: Zea mays contig51594, mRNA sequence | NA | coding protein | psRNATarget |