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BaseInfo

ncRNA ID	osa-miR160d-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:32454988-32455129 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	8 - UGCCUGGCUCCCUGUAUGCCA - 28
Stem-loop(if miRNA)	GG  A     C       C         CU   -    CU       UCAGU    -    C     ---    C   GG UAUGC UGGCUCC UGUAUGCCA  CGC GUAG  GCCAAAC     UGAA ACAA UGCCU   UCUC C   || ||||| ||||||| |||||||||  ||| ||||  |||||||     |||| |||| |||||   |||| G   CC GUACG ACCGAGG GCGUGCGGU  GCG CAUC  CGGUUUG     GCUU UGUU ACGGA   AGAG G --  A     A       A         AG   U    -U       --CAU    G    -     CUU    C
Stem-loop sequence	GGGGAUAUGCCUGGCUCCCUGUAUGCCACUCGCGUAGCUGCCAAACUCAGUUGAAACAACUGCCUUCUCCCGGCGAGAUUCAGGCAUUGUGUUCGUACGUUUGGCUCUACUGCGGAUGGCGUGCGAGGAGCCAAGCAUGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AB071299.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1368   AGGCAUACAGGGAGCCAGGCA   1388 Target Full Sequence	0.0	Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds	NA	coding protein	psRNATarget
AK243230.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1401   AGGCAUACAGGGAGCCAGGCA   1421 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence	NA	coding protein	psRNATarget
XM_015767266.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1509   AGGCAUACAGGGAGCCAGGCA   1529 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group auxin response factor 8 (LOC4330045), mRNA	auxin response factor 8(LOC4330045)	coding protein	psRNATarget
CT835806.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1466   AGGCAUACAGGGAGCCAGGCA   1486 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN052M10, full insert sequence	NA	coding protein	psRNATarget
AK318617.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1639   AGGCAUACAGGGAGCCAGGCA   1659 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence	NA	coding protein	psRNATarget
XM_015778359.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1526   AGGCAUACAGGGAGCCAGGCA   1546 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group auxin response factor 10 (LOC4336419), mRNA	auxin response factor 10(LOC4336419)	coding protein	psRNATarget
XM_015759356.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1709   AGGCAUACAGGGAGCCAGGCA   1729 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group auxin response factor 22 (LOC4348918), mRNA	auxin response factor 22(LOC4348918)	coding protein	psRNATarget
AK100795.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1486   AGGCAUACAGGGAGCCAGGCA   1506 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023121F07, full insert sequence	NA	coding protein	psRNATarget
XM_015788652.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1827   AGGCAUACAGGGAGCCAGGCA   1847 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group auxin response factor 18 (LOC4341882), transcript variant X2, mRNA	auxin response factor 18(LOC4341882)	coding protein	psRNATarget
XM_015788651.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1880   AGGCAUACAGGGAGCCAGGCA   1900 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group auxin response factor 18 (LOC4341882), transcript variant X1, mRNA	auxin response factor 18(LOC4341882)	coding protein	psRNATarget
AK100322.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1997   AGGCAUACAGGGAGCCAGGCA   2017 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence	NA	coding protein	psRNATarget
AK101607.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=||||||||||||*| targets:1452   UGGCAUGCAGGGAGCCAGGGA   1472 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033052A16, full insert sequence	NA	coding protein	psRNATarget
XM_015755935.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=||||||||||||*| targets:1458   UGGCAUGCAGGGAGCCAGGGA   1478 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347316 (LOC4347316), mRNA	uncharacterized LOC4347316(LOC4347316)	coding protein	psRNATarget
AK109449.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||*|||*|||||||||||||| targets:1282   UGACAUUCAGGGAGCCAGGCA   1302 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-113-A09, full insert sequence	NA	coding protein	psRNATarget
XM_015778930.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||*|||*|||||||||||||| targets:1309   UGACAUUCAGGGAGCCAGGCA   1329 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group auxin response factor 13 (LOC9269399), mRNA	auxin response factor 13(LOC9269399)	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).