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BaseInfo

ncRNA ID ath-miRf10012-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - UGCUUUGUCCAAGAACCUGAAA - NA
Stem-loop(if miRNA)          AAA   GA       --  AUU   UG    --   ---- UG  - CACAAAGAGAGAGGCCAUUUGAGUGAAGACGACUGAGUAGAUUAUAGUGCAGAGCCAAAUUGGCAUCAGUCU
GGGAUUUUG   UCU  GACAGAG  GU   CAU  CAGC  GCC    U  CU C                                                                        A
|||||||||   |||  |||||||  ||   |||  ||||  |||    |  || |
CCUUAAAGU   AGA  CUGUUUC  CG   GUA  GUCG  CUC    U  CU C                                                                        A
         CCA   AC       GU  CAU   GU    AU   UAGA --  A UGUUCUUUGUUCUGAGUCACUUGGGUACCUCCGAGACAGGUCACUGUGUUCAGCUCCUUCAGUUCACAUAAG
Stem-loop sequence GGGAUUUUGAAAUCUGAGACAGAGGUAUUCAUUGCAGCGCCUUGCUCCACAAAGAGAGAGGCCAUUUGAGUGAAGACGACUGAGUAGAUUAUAGUGCAGAGCCAAAUUGGCAUCAGUCUAAGAAUACACUUGACUUCCUCGACUUGUGUCACUGGACAGAGCCUCCAUGGGUUCACUGAGUCUUGUUUCUUGUCAUCUAGAUCUCUAGCUGUGAUGUACGCUGCUUUGUCCAAGAACCUGAAAUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_102980.4
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  *||||*||||||||||||||||
targets:1111   AUUCAAGUUCUUGGACAAAGCA   1132

1.0 Arabidopsis thaliana nitrate transporter 1.5 (NRT1.5), mRNA nitrate transporter 1.5(NRT1.5) coding protein psRNATarget
AY051041.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  ||||||||||||||||||=|||
targets:936   UUUCAGGUUCUUGGACAAGGCA   957

1.5 Arabidopsis thaliana putative oligopeptide transporter protein (At1g59740) mRNA, complete cds NA coding protein psRNATarget
AY035037.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  ||||||||||||||||||=|||
targets:1092   UUUCAGGUUCUUGGACAAGGCA   1113

1.5 Arabidopsis thaliana putative oligopeptide transporter protein (At1g59740) mRNA, complete cds NA coding protein psRNATarget
BX816958.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  ||||||||||||||||||=|||
targets:1074   UUUCAGGUUCUUGGACAAGGCA   1095

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH78ZF12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_104667.3
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  ||||||||||||||||||=|||
targets:1177   UUUCAGGUUCUUGGACAAGGCA   1198

1.5 Arabidopsis thaliana Major facilitator superfamily protein mRNA Major facilitator superfamily protein(AT1G59740) coding protein psRNATarget
BT002242.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  *||||||||||||||=|||||=
targets:876   CUUCAGGUUCUUGGAUAAAGCG   897

2.5 Arabidopsis thaliana At2g40460/T2P4.19 mRNA, complete cds NA coding protein psRNATarget
BX820594.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  *||||||||||||||=|||||=
targets:831   CUUCAGGUUCUUGGAUAAAGCG   852

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH50ZE07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY150513.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  *||||||||||||||=|||||=
targets:876   CUUCAGGUUCUUGGAUAAAGCG   897

2.5 Arabidopsis thaliana putative PTR2 family peptide transporter (At2g40460) mRNA, complete cds NA coding protein psRNATarget
AY094400.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  *||||||||||||||=|||||=
targets:1092   CUUCAGGUUCUUGGAUAAAGCG   1113

2.5 Arabidopsis thaliana At2g40460/T2P4.19 mRNA, complete cds NA coding protein psRNATarget
AY063897.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  *||||||||||||||=|||||=
targets:1092   CUUCAGGUUCUUGGAUAAAGCG   1113

2.5 Arabidopsis thaliana putative PTR2 family peptide transporter protein (At2g40460) mRNA, complete cds NA coding protein psRNATarget
NM_129607.4
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  *||||||||||||||=|||||=
targets:1092   CUUCAGGUUCUUGGAUAAAGCG   1113

2.5 Arabidopsis thaliana Major facilitator superfamily protein mRNA Major facilitator superfamily protein(AT2G40460) coding protein psRNATarget
DQ446993.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  *||*||||||||*|||||||||
targets:852   AUUAAGGUUCUUUGACAAAGCA   873

2.5 Arabidopsis thaliana clone pENTR221-At5g28470 proton-dependent oligopeptide transport family protein (At5g28470) mRNA, complete cds NA coding protein psRNATarget
NM_122730.3
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  *||*||||||||*|||||||||
targets:864   AUUAAGGUUCUUUGACAAAGCA   885

2.5 Arabidopsis thaliana Major facilitator superfamily protein mRNA Major facilitator superfamily protein(AT5G28470) coding protein psRNATarget
NM_001344071.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  *||*||||||||*|||||||||
targets:1022   AUUAAGGUUCUUUGACAAAGCA   1043

2.5 Arabidopsis thaliana Major facilitator superfamily protein partial mRNA Major facilitator superfamily protein(AT5G28470) coding protein psRNATarget
BT005811.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  ||*==*||||||||||||||||
targets:1340   UUAUGAGUUCUUGGACAAAGCA   1361

3.0 Arabidopsis thaliana At4g33090/F4I10_20 gene, complete cds NA coding protein psRNATarget
AY143574.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  ||*==*||||||||||||||||
targets:1352   UUAUGAGUUCUUGGACAAAGCA   1373

3.0 Arabidopsis thaliana aminopeptidase M mRNA, complete cds NA coding protein psRNATarget
AY064961.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  ||*==*||||||||||||||||
targets:1377   UUAUGAGUUCUUGGACAAAGCA   1398

3.0 Arabidopsis thaliana AT4g33090/F4I10_20 mRNA, complete cds NA coding protein psRNATarget
AK227105.1
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  ||*==*||||||||||||||||
targets:1376   UUAUGAGUUCUUGGACAAAGCA   1397

3.0 Arabidopsis thaliana mRNA for aminopeptidase like protein, complete cds, clone: RAFL09-74-P10 NA coding protein psRNATarget
NM_119463.5
ncRNA:22   AAAGUCCAAGAACCUGUUUCGU   1
  ||*==*||||||||||||||||
targets:1479   UUAUGAGUUCUUGGACAAAGCA   1500

3.0 Arabidopsis thaliana aminopeptidase M1 (APM1), mRNA aminopeptidase M1(APM1) coding protein psRNATarget
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