Search result

BaseInfo

ncRNA ID novel_zma_miR428
Species Zea mays
Class miRNA
Genome position Chr7:146621569-146621659 [+]
Reference genome RefGen_v4
Source SRR2089709
Length 24
Mature sequence(if miRNA) 1 - CCAUGUGGAUUGAAGUGUAUUGGA - 24
Stem-loop(if miRNA) --              GU       AAU  AUU GG       UGAC
  CCAUGUGGAUUGAA  GUAUUGG   GU   G  UAGAUUU    U
  ||||||||||||||  |||||||   ||   |  |||||||    U
  GGUACACCUAACUU  CAUAACU   CA   C  AUUUAAG    G
UA              AU       ---  -GC AA       UAUC
Stem-loop sequence CCAUGUGGAUUGAAGUGUAUUGGAAUGUAUUGGGUAGAUUUUGACUUGCUAUGAAUUUAAACCGACUCAAUACUAUUCAAUCCACAUGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542805.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  ||||||||||||||||||||||||
targets:2541   UCCAAUACACUUCAAUCCACAUGG   2564

0.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542806.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  ||||||||||||||||||||||||
targets:2541   UCCAAUACACUUCAAUCCACAUGG   2564

0.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542807.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  ||||||||||||||||||||||||
targets:2541   UCCAAUACACUUCAAUCCACAUGG   2564

0.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X3, mRNA NA coding protein psRNATarget
HI403242.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:86   UCCAAUAUACUUCAAUCCACAUGG   109

1.0 Sequence 1367 from Patent EP2074227 NA coding protein psRNATarget
HI403242.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:122   UCCAAUAUACUUCAAUCCACAUGG   145

1.0 Sequence 1367 from Patent EP2074227 NA coding protein psRNATarget
LQ235372.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:86   UCCAAUAUACUUCAAUCCACAUGG   109

1.0 Sequence 1367 from Patent EP2985353 NA coding protein psRNATarget
LQ235372.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:122   UCCAAUAUACUUCAAUCCACAUGG   145

1.0 Sequence 1367 from Patent EP2985353 NA coding protein psRNATarget
JB163703.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:86   UCCAAUAUACUUCAAUCCACAUGG   109

1.0 Sequence 1367 from Patent EP2559767 NA coding protein psRNATarget
JB163703.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:122   UCCAAUAUACUUCAAUCCACAUGG   145

1.0 Sequence 1367 from Patent EP2559767 NA coding protein psRNATarget
BT016884.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  |==|||||||||||||||||||||
targets:246   UUUAAUACACUUCAAUCCACAUGG   269

0.0 Zea mays clone Contig717 mRNA sequence NA coding protein psRNATarget
XM_020549619.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  ||||||||||||||=||||||||*
targets:3824   UCCAAUACACUUCAGUCCACAUGA   3847

2.5 PREDICTED: Zea mays glucosamine fructose-6-phosphate aminotransferase1 (LOC100276333), transcript variant X14, mRNA NA coding protein psRNATarget
BT070074.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  ||||||||||||||=||||||||*
targets:1046   UCCAAUACACUUCAGUCCACAUGA   1069

2.5 Zea mays full-length cDNA clone ZM_BFb0372E16 mRNA, complete cds NA coding protein psRNATarget
EU976224.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  ||||||||||||||=||||||||*
targets:857   UCCAAUACACUUCAGUCCACAUGA   880

2.5 Zea mays clone 688476 mRNA sequence NA coding protein psRNATarget
EZ106648.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  |=||||||||||||||||||=||*
targets:43   UUCAAUACACUUCAAUCCACGUGA   66

2.5 TSA: Zea mays contig42306, mRNA sequence NA coding protein psRNATarget
AY111503.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  |==|||||||||||||=||||||*
targets:160   UUUAAUACACUUCAAUUCACAUGA   183

2.5 Zea mays CL14541_1 mRNA sequence NA coding protein psRNATarget
EZ066328.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  |==|||||||||||||||||||*|
targets:64   UUUAAUACACUUCAAUCCACAUAG   87

1.5 TSA: Zea mays contig01962, mRNA sequence NA coding protein psRNATarget
EZ110342.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  ||||||||||**||||||||||||
targets:11   UCCAAUACACACCAAUCCACAUGG   34

2.5 TSA: Zea mays contig46002, mRNA sequence NA coding protein psRNATarget
XM_008681684.2
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  *|||||||||||||||*||||||*
targets:2888   CCCAAUACACUUCAAUACACAUGU   2911

2.5 PREDICTED: Zea mays pyrophosphate-energized vacuolar membrane proton pump (LOC103654862), mRNA NA coding protein psRNATarget
JB167351.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  *|||||||||||||||*||||||*
targets:104   CCCAAUACACUUCAAUACACAUGU   127

2.5 Sequence 5015 from Patent EP2559767 NA coding protein psRNATarget
LQ239020.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  *|||||||||||||||*||||||*
targets:104   CCCAAUACACUUCAAUACACAUGU   127

2.5 Sequence 5015 from Patent EP2985353 NA coding protein psRNATarget
HI406890.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  *|||||||||||||||*||||||*
targets:104   CCCAAUACACUUCAAUACACAUGU   127

2.5 Sequence 5015 from Patent EP2074227 NA coding protein psRNATarget
XM_008654741.2
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  *=||||||**||||||||||||||
targets:1879   CUCAAUACUAUUCAAUCCACAUGG   1902

2.0 PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008654742.2
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  *=||||||**||||||||||||||
targets:1815   CUCAAUACUAUUCAAUCCACAUGG   1838

2.0 PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X2, mRNA NA coding protein psRNATarget
BT054344.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  *=||||||**||||||||||||||
targets:1131   CUCAAUACCAUUCAAUCCACAUGG   1154

2.0 Zea mays full-length cDNA clone ZM_BFb0357J03 mRNA, complete cds NA coding protein psRNATarget
NM_001152495.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  *=||||||**||||||||||||||
targets:1131   CUCAAUACCAUUCAAUCCACAUGG   1154

2.0 Zea mays OTU-like cysteine protease family protein (LOC100279494), mRNA NA coding protein psRNATarget
JB166344.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  *=||||||**||||||||||||||
targets:76   CUCAAUACUAUUCAAUCCACAUGG   99

2.0 Sequence 4008 from Patent EP2559767 NA coding protein psRNATarget
HI405883.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  *=||||||**||||||||||||||
targets:76   CUCAAUACUAUUCAAUCCACAUGG   99

2.0 Sequence 4008 from Patent EP2074227 NA coding protein psRNATarget
LQ238013.1
ncRNA:24   AGGUUAUGUGAAGUUAGGUGUACC   1
  *=||||||**||||||||||||||
targets:76   CUCAAUACUAUUCAAUCCACAUGG   99

2.0 Sequence 4008 from Patent EP2985353 NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.