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BaseInfo

ncRNA ID osa-miR166j-5p
Species Oryza sativa
Class miRNA
Genome position Chr3:30392782-30392881 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 60 - GAAUGACGUCCGGUCUGAAGA - 80
Stem-loop(if miRNA) -UGA       CU    A A       C   C         A        C
    UCCAUGG  GUUG G GGAAUGA GUC GGUCUGAAG UCGCCGUC C
    |||||||  |||| | ||||||| ||| ||||||||| ||||||||
    AGGUACU  CAGU C CCUUACU CGG CCAGGCUUC GGUGGCGG C
CCCA       --    A C       U   A         -        A
Stem-loop sequence UGAUCCAUGGCUGUUGAGAGGAAUGACGUCCGGUCUGAAGAUCGCCGUCCCCAGGCGGUGGCUUCGGACCAGGCUUCAUUCCCCAUGACUCAUGGAACCC

Reference

1 PMID:15685364
"Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa";
Li Y, Li W, Jin YX;
Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).