ncRNA ID | osa-miR166j-5p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr3:30392782-30392881 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 60 - GAAUGACGUCCGGUCUGAAGA - 80 |
Stem-loop(if miRNA) |
-UGA       CU    A A       C   C         A        C     UCCAUGG  GUUG G GGAAUGA GUC GGUCUGAAG UCGCCGUC C     |||||||  |||| | ||||||| ||| ||||||||| ||||||||     AGGUACU  CAGU C CCUUACU CGG CCAGGCUUC GGUGGCGG C CCCA       --    A C       U   A         -        A |
Stem-loop sequence | UGAUCCAUGGCUGUUGAGAGGAAUGACGUCCGGUCUGAAGAUCGCCGUCCCCAGGCGGUGGCUUCGGACCAGGCUUCAUUCCCCAUGACUCAUGGAACCC |
1 | PMID:15685364
"Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"; Li Y, Li W, Jin YX; Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005). |
2 | PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011). |