Search result

BaseInfo

ncRNA ID novel_zma_miR418
Species Zea mays
Class miRNA
Genome position Chr6:94036700-94036785 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR5100255
Length 22
Mature sequence(if miRNA) 1 - AUGCCUGGCUCCCUGUAUGCCA - 22
Stem-loop(if miRNA) --    C       C          A   -   GC    C CGU
  AUGC UGGCUCC UGUAUGCCAC CAU GUA  CCAA C   G
  |||| ||||||| |||||||||| ||| |||  |||| |
  UACG ACCGAGG ACGUGCGGUG GUG CGU  GGUU G   A
UG    A       A          G   U   -A    A UGU
Stem-loop sequence AUGCCUGGCUCCCUGUAUGCCACACAUGUAGCCCAACCCGUGAUGUGAUUGGAUGCUGUGGGUGGCGUGCAAGGAGCCAAGCAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI402934.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  ||||||||||||||||||||||
targets:72   UGGCAUACAGGGAGCCAGGCAU   93

0.0 Sequence 1059 from Patent EP2074227 NA coding protein psRNATarget
LQ235064.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  ||||||||||||||||||||||
targets:72   UGGCAUACAGGGAGCCAGGCAU   93

0.0 Sequence 1059 from Patent EP2985353 NA coding protein psRNATarget
JB163395.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  ||||||||||||||||||||||
targets:72   UGGCAUACAGGGAGCCAGGCAU   93

0.0 Sequence 1059 from Patent EP2559767 NA coding protein psRNATarget
EU950410.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:23   AGGCAUACAGGGAGCCAGGCAU   44

0.0 Zea mays clone 490802 mRNA sequence NA coding protein psRNATarget
NM_001176580.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  |||||||||||||||||||||*
targets:633   UGGCAUACAGGGAGCCAGGCAC   654

1.0 Zea mays uncharacterized LOC100383967 (LOC100383967), mRNA NA coding protein psRNATarget
BT068739.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  |||||||||||||||||||||*
targets:633   UGGCAUACAGGGAGCCAGGCAC   654

1.0 Zea mays full-length cDNA clone ZM_BFb0377F03 mRNA, complete cds NA coding protein psRNATarget
EU951398.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:12   AGGCAUACAGGGAGCCAGGCAU   33

0.0 Zea mays clone 701434 mRNA sequence NA coding protein psRNATarget
BT084457.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  |||||||||||||||||||||*
targets:952   UGGCAUACAGGGAGCCAGGCAC   973

1.0 Zea mays full-length cDNA clone ZM_BFb0118K06 mRNA, complete cds NA coding protein psRNATarget
JX428504.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1311   AGGCAUACAGGGAGCCAGGCAU   1332

0.0 Zea mays subsp. mays clone pUT3102 ARF2 ARF type transcription factor mRNA, partial cds NA coding protein psRNATarget
NM_001177066.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1332   AGGCAUACAGGGAGCCAGGCAU   1353

0.0 Zea mays auxin response factor 21 (ARF21), mRNA NA coding protein psRNATarget
KJ727965.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1338   AGGCAUACAGGGAGCCAGGCAU   1359

0.0 Zea mays clone pUT6078 ARF transcription factor (ARF21) mRNA, complete cds NA coding protein psRNATarget
XM_008665166.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1407   AGGCAUACAGGGAGCCAGGCAU   1428

0.0 PREDICTED: Zea mays auxin response factor 10 (LOC103641851), mRNA NA coding protein psRNATarget
BT066347.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1744   AGGCAUACAGGGAGCCAGGCAU   1765

0.0 Zea mays full-length cDNA clone ZM_BFb0348D12 mRNA, complete cds NA coding protein psRNATarget
NM_001348794.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1746   AGGCAUACAGGGAGCCAGGCAU   1767

0.0 Zea mays auxin response factor 17 (ARF17), mRNA NA coding protein psRNATarget
NM_001165660.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1604   AGGCAUACAGGGAGCCAGGCAU   1625

0.0 Zea mays auxin response factor 2 (ARF2), mRNA NA coding protein psRNATarget
BT060467.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1604   AGGCAUACAGGGAGCCAGGCAU   1625

0.0 Zea mays full-length cDNA clone ZM_BFb0003E21 mRNA, complete cds NA coding protein psRNATarget
XM_008649977.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1891   AGGCAUACAGGGAGCCAGGCAU   1912

0.0 PREDICTED: Zea mays auxin response factor 21 (ARF21), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008649975.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1895   AGGCAUACAGGGAGCCAGGCAU   1916

0.0 PREDICTED: Zea mays auxin response factor 21 (ARF21), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008649976.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1964   AGGCAUACAGGGAGCCAGGCAU   1985

0.0 PREDICTED: Zea mays auxin response factor 21 (ARF21), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649974.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:1967   AGGCAUACAGGGAGCCAGGCAU   1988

0.0 PREDICTED: Zea mays auxin response factor 21 (ARF21), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008645286.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||||||||||||||||||
targets:2254   AGGCAUACAGGGAGCCAGGCAU   2275

0.0 PREDICTED: Zea mays Auxin response factor 16 (LOC100280136), transcript variant X1, mRNA NA coding protein psRNATarget
EU955385.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|*|||||||||||||||||||
targets:1499   AGCCAUACAGGGAGCCAGGCAU   1520

0.0 Zea mays clone 1530377 mRNA sequence NA coding protein psRNATarget
XM_008680610.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|*|||||||||||||||||||
targets:1689   AGCCAUACAGGGAGCCAGGCAU   1710

0.0 PREDICTED: Zea mays auxin response factor 8 (LOC103653810), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680611.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|*|||||||||||||||||||
targets:1697   AGCCAUACAGGGAGCCAGGCAU   1718

0.0 PREDICTED: Zea mays auxin response factor 8 (LOC103653810), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001349854.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|*|||||||||||||||||||
targets:1488   AGCCAUACAGGGAGCCAGGCAU   1509

0.0 Zea mays auxin response factor 8 (ARF8), mRNA NA coding protein psRNATarget
EU941456.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  |*||||=||||||||||||||*
targets:254   UAGCAUGCAGGGAGCCAGGCAC   275

2.0 Zea mays clone 1453850 mRNA sequence NA coding protein psRNATarget
JX428517.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  |*||||=||||||||||||||*
targets:1188   UAGCAUGCAGGGAGCCAGGCAC   1209

2.0 Zea mays subsp. mays clone pUT3116 ARF5 transcription factor mRNA, partial cds NA coding protein psRNATarget
NM_001176127.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  |*||||=||||||||||||||*
targets:1280   UAGCAUGCAGGGAGCCAGGCAC   1301

2.0 Zea mays auxin response factor 5 (ARF5), mRNA NA coding protein psRNATarget
BT067327.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  |*||||=||||||||||||||*
targets:1280   UAGCAUGCAGGGAGCCAGGCAC   1301

2.0 Zea mays full-length cDNA clone ZM_BFc0012D17 mRNA, complete cds NA coding protein psRNATarget
XM_008675990.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||*|=||||||||||||*
targets:1312   AGGCAUCCGGGGAGCCAGGCAA   1333

3.0 PREDICTED: Zea mays uncharacterized LOC103650414 (LOC103650414), mRNA NA coding protein psRNATarget
XM_020545962.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||*|=||||||||||||*
targets:2655   AGGCAUCCGGGGAGCCAGGCAA   2676

3.0 PREDICTED: Zea mays uncharacterized LOC103641767 (LOC103641767), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020545964.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||*|=||||||||||||*
targets:2686   AGGCAUCCGGGGAGCCAGGCAA   2707

3.0 PREDICTED: Zea mays uncharacterized LOC103641767 (LOC103641767), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020545963.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||*|=||||||||||||*
targets:2765   AGGCAUCCGGGGAGCCAGGCAA   2786

3.0 PREDICTED: Zea mays uncharacterized LOC103641767 (LOC103641767), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020545961.1
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  *|||||*|=||||||||||||*
targets:2760   AGGCAUCCGGGGAGCCAGGCAA   2781

3.0 PREDICTED: Zea mays uncharacterized LOC103641767 (LOC103641767), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008651793.2
ncRNA:22   ACCGUAUGUCCCUCGGUCCGUA   1
  ***|||==*|||||||||||||
targets:244   AACCAUGUCGGGAGCCAGGCAU   265

3.0 PREDICTED: Zea mays Putative WRKY DNA-binding domain superfamily protein (LOC103630738), mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.