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BaseInfo

ncRNA ID	novel_zma_miR416
Species	Zea mays
Class	miRNA
Genome position	Chr6:92449068-92449151 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089714;SRR2089715;SRR2287159;SRR2089701;SRR2089704;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - GUGGAUUGGGUGGUAUUGAGUCAG - 24
Stem-loop(if miRNA)	--         -   -------------G  UUGAGUCAGUUUAAGUCA   GUGGAUUGG GUG              UA                  A   ||||||||| |||              ||   CACCUAACC CAC              CA                  U UA         U   AUAACCUUUCCUAA  CUACCUAAAACUGAAUGA
Stem-loop sequence	GUGGAUUGGGUGGUAUUGAGUCAGUUUAAGUCAAUAGUAAGUCAAAAUCCAUCACAAUCCUUUCCAAUACACUCCAAUCCACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551219.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   |*||||||||||||=||||||||| targets:287   CCGACUCAAUACCAUCCAAUCCAC   310 Target Full Sequence	1.5	PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA	NA	coding protein	psRNATarget
JB167578.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   =*|||||||||||||||||||=|| targets:74   UCGACUCAAUACCACCCAAUCUAC   97 Target Full Sequence	1.5	Sequence 5242 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239247.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   =*|||||||||||||||||||=|| targets:74   UCGACUCAAUACCACCCAAUCUAC   97 Target Full Sequence	1.5	Sequence 5242 from Patent EP2985353	NA	coding protein	psRNATarget
HI407117.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   =*|||||||||||||||||||=|| targets:74   UCGACUCAAUACCACCCAAUCUAC   97 Target Full Sequence	1.5	Sequence 5242 from Patent EP2074227	NA	coding protein	psRNATarget
AY107486.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   |*||||=||||||||||=|||||| targets:19   CCGACUUAAUACCACCCGAUCCAC   42 Target Full Sequence	2.5	Zea mays PCO106046 mRNA sequence	NA	coding protein	psRNATarget
AY106055.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   =|*|||=||||||||||||||||| targets:979   UUAACUUAAUACCACCCAAUCCAC   1002 Target Full Sequence	1.0	Zea mays PCO115884 mRNA sequence	NA	coding protein	psRNATarget
NM_001159099.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   =|*|||=||||||||||||||||| targets:983   UUAACUUAAUACCACCCAAUCCAC   1006 Target Full Sequence	1.0	Zea mays mitochondrial glycoprotein (LOC100286211), mRNA	NA	coding protein	psRNATarget
EU976164.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   =|*|||=||||||||||||||||| targets:983   UUAACUUAAUACCACCCAAUCCAC   1006 Target Full Sequence	1.0	Zea mays clone 679349 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008654744.2	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   |*||||=||||||||||||||=|| targets:2154   CCGACUUAAUACCACCCAAUCUAC   2177 Target Full Sequence	2.5	PREDICTED: Zea mays GTPase-activating protein gyp7 (LOC103633061), mRNA	NA	coding protein	psRNATarget
EU970241.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   |*||||||||||||*||||||||| targets:1119   CCGACUCAAUACCAGCCAAUCCAC   1142 Target Full Sequence	1.5	Zea mays clone 342550 mRNA sequence	NA	coding protein	psRNATarget
BT066125.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   =**|||=||||||||=|||||||| targets:1070   UCAACUUAAUACCACUCAAUCCAC   1093 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0377H04 mRNA, complete cds	NA	coding protein	psRNATarget
BT042439.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   =**|||=||||||||=|||||||| targets:961   UCAACUUAAUACCACUCAAUCCAC   984 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0234C02 mRNA, complete cds	NA	coding protein	psRNATarget
EU952677.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   =**|||=||||||||=|||||||| targets:983   UCAACUUAAUACCACUCAAUCCAC   1006 Target Full Sequence	2.5	Zea mays clone 1286167 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008675817.2	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   =*||||||||*||||=|||||||| targets:4055   UCGACUCAAUCCCACUCAAUCCAC   4078 Target Full Sequence	2.5	PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   ||*|=|||||*||||=|||||||| targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119 Target Full Sequence	2.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   ||*|=|||||*||||=|||||||| targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119 Target Full Sequence	2.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   ||*|=|||||*||||=|||||||| targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119 Target Full Sequence	2.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   ||*|=|||||*||||=|||||||| targets:89   CUCAUUCAAUCCCACUCAAUCCAC   112 Target Full Sequence	2.5	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   ||*|=|||||*||||=|||||||| targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   ||*|=|||||*||||=|||||||| targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145 Target Full Sequence	2.5	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   ||*|=|||||*||||=|||||||| targets:1413   CUCAUUCAAUCCCACUCAAUCCAC   1436 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548583.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   |**|||||||*|||||||||||=| targets:3053   CCCACUCAAUUCCACCCAAUCCGC   3076 Target Full Sequence	2.5	PREDICTED: Zea mays B3 domain-containing protein Os07g0563300-like (LOC109944078), mRNA	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   GACUGAGUUAUGGUGGGUUAGGUG   1   ****||||||*|||=||||||||| targets:1443   AGCCCUCAAUCCCAUCCAAUCCAC   1466 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget