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BaseInfo

ncRNA ID	novel_zma_miR412
Species	Zea mays
Class	miRNA
Genome position	Chr6:83495449-83495564 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2287161;SRR2089700
Length	21
Mature sequence(if miRNA)	1 - UUUGGGAGCAAGUGGAAUGGA - 21
Stem-loop(if miRNA)	--                              -U   A                    C   UUUGGGAGCAAGUGGAAUGGAGGGAAUUGA  GGG CUAUAAUCCCUUGUUAUUCA A   ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||   AAACCCUCGUUCACCUUAUUUCUCUUAACU  CCC GAUAUUAGGGAACGAUAAGU A AC                              CU   -                    U
Stem-loop sequence	UUUGGGAGCAAGUGGAAUGGAGGGAAUUGAUGGGACUAUAAUCCCUUGUUAUUCACAAUUGAAUAGCAAGGGAUUAUAGCCCUCUCAAUUCUCUUUAUUCCACUUGCUCCCAAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406027.1	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   |=||||=|||||||||||||| targets:103   UUCAUUUCACUUGCUCCCAAA   123 Target Full Sequence	1.0	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
JB166488.1	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   |=||||=|||||||||||||| targets:103   UUCAUUUCACUUGCUCCCAAA   123 Target Full Sequence	1.0	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   |=||||=|||||||||||||| targets:103   UUCAUUUCACUUGCUCCCAAA   123 Target Full Sequence	1.0	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
BT062966.1	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   |=||||=|||||||||||||| targets:2639   UUCAUUUCACUUGCUCCCAAA   2659 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   |=||||=|||||||||||||| targets:2639   UUCAUUUCACUUGCUCCCAAA   2659 Target Full Sequence	1.0	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
BT061256.1	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   ||=||||||||||||=||||| targets:1898   UCUAUUCCACUUGCUUCCAAA   1918 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0127C16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   |=||||=|||||||||||||| targets:2727   UUCAUUUCACUUGCUCCCAAA   2747 Target Full Sequence	1.0	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963261.1	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   ||||*|=|||||||||||||| targets:1037   UCCAAUUCACUUGCUCCCAAA   1057 Target Full Sequence	2.0	Zea mays clone 260003 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150318.1	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   ||||*|=|||||||||||||| targets:1037   UCCAAUUCACUUGCUCCCAAA   1057 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100276558), transcript variant 2, mRNA	NA	coding protein	psRNATarget
NM_001320255.1	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   ||||*|=|||||||||||||| targets:1246   UCCAAUUCACUUGCUCCCAAA   1266 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100276558), transcript variant 1, mRNA	NA	coding protein	psRNATarget
BT017823.1	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   |=||*||||=||||||||||| targets:867   UUCAAUCCAUUUGCUCCCAAA   887 Target Full Sequence	2.5	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget
XM_008651631.2	ncRNA:21   AGGUAAGGUGAACGAGGGUUU   1   |=||*||||=||||||||||| targets:3495   UUCAAUCCAUUUGCUCCCAAA   3515 Target Full Sequence	2.5	PREDICTED: Zea mays Topoisomerase II-associated protein PAT1 (LOC103630586), mRNA	NA	coding protein	psRNATarget