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BaseInfo

ncRNA ID	novel_zma_miR405
Species	Zea mays
Class	miRNA
Genome position	Chr6:30130699-30130822 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR5451003
Length	24
Mature sequence(if miRNA)	101 - ACAGGACCUUCGGCGACAAAGCAG - 124
Stem-loop(if miRNA)	--ACA            --A      -----------A AUCCCCAACAGUAGCCCCUUCGCGGUGCU      GGACCUUCGGCG   CAAAGC            G                             A      ||||||||||||   ||||||            |                             G      CCUGGAAGCCGU   GUUUCG            A                             A AAAAA            AAG      GAACCUCUAAAA AGUGCCUAGUUCGAGCAAUGUUUUUUGCU
Stem-loop sequence	ACAGGACCUUCGGCGACAAAGCAGAUCCCCAACAGUAGCCCCUUCGCGGUGCUAGAUCGUUUUUUGUAACGAGCUUGAUCCGUGAAAAAAUCUCCAAGGCUUUGGAAUGCCGAAGGUCCAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055793.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   ||||||*||||||||||||||||| targets:1483   CUGCUUCGUCGCCGAAGGUCCUGU   1506 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0196K24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153148.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   ||||||*||||||||||||||||| targets:1483   CUGCUUCGUCGCCGAAGGUCCUGU   1506 Target Full Sequence	1.0	Zea mays uncharacterized LOC100280217 (LOC100280217), mRNA	NA	coding protein	psRNATarget
BT036187.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*||||||||||||||||| targets:1047   AUGCUUCGUCGCCGAAGGUCCUGU   1070 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0099P11 mRNA, complete cds	NA	coding protein	psRNATarget
EU956321.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*|||||||||||||=||| targets:702   AUGCUUCGUCGCCGAAGGUCUUGU   725 Target Full Sequence	2.5	Zea mays clone 1560788 mRNA sequence	NA	coding protein	psRNATarget
EU974583.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*|||||||||||||=||| targets:804   AUGCUUCGUCGCCGAAGGUCUUGU   827 Target Full Sequence	2.5	Zea mays clone 453433 mRNA sequence	NA	coding protein	psRNATarget
EU940891.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*|||||||||||||=||| targets:615   AUGCUUCGUCGCCGAAGGUCUUGU   638 Target Full Sequence	2.5	Zea mays clone 1166454 mRNA sequence	NA	coding protein	psRNATarget
EZ110791.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*||||||||||||||||* targets:19   AUGCUUCGUCGCCGAAGGUCCUGC   42 Target Full Sequence	2.0	TSA: Zea mays contig46452, mRNA sequence	NA	coding protein	psRNATarget
EU961263.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*||||||||||||||||* targets:285   AUGCUUCGUCGCCGAAGGUCCUGC   308 Target Full Sequence	2.0	Zea mays clone 234027 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU946731.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*||||||||||||||||* targets:670   AUGCUUCGUCGCCGAAGGUCCUGC   693 Target Full Sequence	2.0	Zea mays clone 323143 mRNA sequence	NA	coding protein	psRNATarget
EU963105.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*||||||||||||||||* targets:1080   AUGCUUCGUCGCCGAAGGUCCUGC   1103 Target Full Sequence	2.0	Zea mays clone 257652 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT083947.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*||||||||||||||||* targets:1064   AUGCUUCGUCGCCGAAGGUCCUGC   1087 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0057E13 mRNA, complete cds	NA	coding protein	psRNATarget
BT063224.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*||||||||||||||||* targets:1194   AUGCUUCGUCGCCGAAGGUCCUGC   1217 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0039P05 mRNA, complete cds	NA	coding protein	psRNATarget
EU970085.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*||||||||||||||||* targets:185   AUGCUUCGUCGCCGAAGGUCCUGC   208 Target Full Sequence	2.0	Zea mays clone 339510 mRNA sequence	NA	coding protein	psRNATarget
BT061980.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*||||||||||||||||* targets:1280   AUGCUUCGUCGCCGAAGGUCCUGC   1303 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0203B04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551676.1	ncRNA:24   GACGAAACAGCGGCUUCCAGGACA   1   *|||||*|||||||||||||||*| targets:1820   AUGCUUCGUCGCCGAAGGUCCUAU   1843 Target Full Sequence	2.5	PREDICTED: Zea mays UDP-glycosyltransferase 72B1 (LOC100383065), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550866.1	ncRNA:24   GAC-------GAAACAGCGGCUUCCAGGACA   1   |||-------|||*||||||||||||||||* targets:2060   CUGGACCAUACUUCGUCGCCGAAGGUCCUGC   2090 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103650264 (LOC103650264), mRNA	NA	coding protein	psRNATarget