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BaseInfo

ncRNA ID	novel_zma_miR404
Species	Zea mays
Class	miRNA
Genome position	Chr6:32359707-32359857 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	1 - CCUCUGUUCCAAAAUAUAAGACGU - 24
Stem-loop(if miRNA)	--  U  GU      A               -------------CUCUUA     -------    U  UUUUGCUAUGUAUCUAG   CC CU  UCCAAA UAUAAGACGUUUUGA                   UAGAU       ACAU GC                 A   || ||  |||||| |||||||||||||||                   |||||       |||| ||   GG GG  AGGUUU AUAUUCUGCAAAGCU                   UGUAU       GAUA UG                 C AG  U  UU      A               ACAAAACCGAAAAGUUCAA     UAAAAAC    -  UGAAUCUAUAUGUCAUA
Stem-loop sequence	CCUCUGUUCCAAAAUAUAAGACGUUUUGACUCUUAUAGAUACAUUGCUUUUGCUAUGUAUCUAGACAUACUGUAUAUCUAAGUGUAUAGCAAAAAUUAUGUAACUUGAAAAGCCAAAACAUCGAAACGUCUUAUAAUUUGGAUUGGUGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067945.2	ncRNA:24   UGCAGAAUAUAAAACCUUGUCUCC   1   |*||||||||*||||||||||||* targets:1555   AGGUCUUAUAAUUUGGAACAGAGA   1578 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0007G15 mRNA, complete cds	NA	coding protein	psRNATarget
EU953520.1	ncRNA:24   UGCAGAAUAUAAAACCUUGUCUCC   1   ||**|||*||||||||||=||||| targets:4   ACAACUUCUAUUUUGGAAUAGAGG   27 Target Full Sequence	2.5	Zea mays clone 1430111 ferredoxin mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670798.2	ncRNA:24   UGCAGAAUAUAAAACCUUGUCUCC   1   |=|**|||*|||||||=||||||| targets:8512   AUGAAUUAGAUUUUGGGACAGAGG   8535 Target Full Sequence	2.5	PREDICTED: Zea mays protein CHROMATIN REMODELING 19 (LOC103646072), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT065073.1	ncRNA:24   UGCAGAAUAUAAAACCUUGUCUCC   1   |****||||||||||||||=|||* targets:716   AAAAGUUAUAUUUUGGAACGGAGA   739 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0167E08 mRNA, complete cds	NA	coding protein	psRNATarget