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BaseInfo

ncRNA ID novel_zma_miR396
Species Zea mays
Class miRNA
Genome position Chr6:78044729-78044778 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089713;SRR1997865;SRR5451003;SRR5451004;SRR5451005;SRR1997866;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089704;SRR2089706
Length 22
Mature sequence(if miRNA) 29 - UGGUUGGCGAUGGUGUGCACUU - 50
Stem-loop(if miRNA) --U      C      G    C  GC
   GGUUGG GAUGGU UGCA UU  U
   |||||| |||||| |||| ||
   CCAGCU CUACCG GCGU AG  G
AGG      -      -    C  UU
Stem-loop sequence UGGUUGGCGAUGGUGUGCACUUGCUGUUGACUGCGGCCAUCUCGACCGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020550798.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=||||||||||||||||||||
targets:491   AGGUGCACACCAUCGCCAACCA   512

0.0 PREDICTED: Zea mays uncharacterized LOC103652003 (LOC103652003), mRNA NA coding protein psRNATarget
XM_008677721.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=||||||||||||||||||||
targets:491   AGGUGCACACCAUCGCCAACCA   512

0.0 PREDICTED: Zea mays uncharacterized LOC103652068 (LOC103652068), mRNA NA coding protein psRNATarget
BT042193.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  **||||*||||=||||||||||
targets:1411   UCGUGCCCACCGUCGCCAACCA   1432

2.5 Zea mays full-length cDNA clone ZM_BFb0158G22 mRNA, complete cds NA coding protein psRNATarget
NM_001154601.2
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  **||||*||||=||||||||||
targets:1770   UCGUGCCCACCGUCGCCAACCA   1791

2.5 Zea mays xylosyltransferase oxt (LOC100281681), mRNA NA coding protein psRNATarget
EU957530.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  **||||*||||=||||||||||
targets:1770   UCGUGCCCACCGUCGCCAACCA   1791

2.5 Zea mays clone 1596512 xylosyltransferase oxt mRNA, complete cds NA coding protein psRNATarget
EU959283.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=|*||=|*|||||||||||||
targets:201   AGGCGCGCUCCAUCGCCAACCA   222

3.0 Zea mays clone 214135 mRNA sequence NA coding protein psRNATarget
BT061775.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=|*||=|*|||||||||||||
targets:247   AGGCGCGCUCCAUCGCCAACCA   268

3.0 Zea mays full-length cDNA clone ZM_BFb0182C20 mRNA, complete cds NA coding protein psRNATarget
BT055732.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=|*||=|*|||||||||||||
targets:183   AGGCGCGCUCCAUCGCCAACCA   204

3.0 Zea mays full-length cDNA clone ZM_BFb0153L13 mRNA, complete cds NA coding protein psRNATarget
NM_001153117.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=|*||=|*|||||||||||||
targets:183   AGGCGCGCUCCAUCGCCAACCA   204

3.0 Zea mays uncharacterized LOC100280185 (cl17969_1), mRNA NA coding protein psRNATarget
XM_008674009.2
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=|*||=|*|||||||||||||
targets:305   AGGCGCGCUCCAUCGCCAACCA   326

3.0 PREDICTED: Zea mays hypothetical protein (umc2020a), transcript variant X1, mRNA NA coding protein psRNATarget
BT037041.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=|*||=|*|||||||||||||
targets:161   AGGCGCGCUCCAUCGCCAACCA   182

3.0 Zea mays full-length cDNA clone ZM_BFb0152H12 mRNA, complete cds NA coding protein psRNATarget
NM_001143023.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=|*||=|*|||||||||||||
targets:161   AGGCGCGCUCCAUCGCCAACCA   182

3.0 Zea mays hypothetical protein (umc2020a), mRNA NA coding protein psRNATarget
EU969995.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=|*||=|*|||||||||||||
targets:195   AGGCGCGCUCCAUCGCCAACCA   216

3.0 Zea mays clone 338307 mRNA sequence NA coding protein psRNATarget
BT065947.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=|*||=|*|||||||||||||
targets:205   AGGCGCGCUCCAUCGCCAACCA   226

3.0 Zea mays full-length cDNA clone ZM_BFb0056M19 mRNA, complete cds NA coding protein psRNATarget
EU960341.1
ncRNA:22   UUCACGUGUGGUAGCGGUUGGU   1
  |=|*||=|*|||||||||||||
targets:197   AGGCGCGCUCCAUCGCCAACCA   218

3.0 Zea mays clone 223854 mRNA sequence NA coding protein psRNATarget
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