Search result

BaseInfo

ncRNA ID	novel_zma_miR392
Species	Zea mays
Class	miRNA
Genome position	Chr6:105550474-105550607 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - GGUUAUAUCUAGAUCUAACGGACC - 24
Stem-loop(if miRNA)	--   A        U    CC          -   AUCG    UUG    GGG      U  AAA     A   UCC UUAGAUCU AGAU  AACCGUAUGU GUA    UGGU   UUAG   CUUUUU AU   GCUAC C   ||| |||||||| ||||  |||||||||| |||    ||||   ||||   |||||| ||   ||||| A   AGG AAUCUAGA UCUA  UUGGCAUACA UAU    AUCG   AAUU   GGAGAG UG   UGAUG A CC   C        -    UA          G   --AA    UAA    --A      -  --G     G
Stem-loop sequence	UCCAUUAGAUCUUAGAUCCAACCGUAUGUGUAAUCGUGGUUUGUUAGGGGCUUUUUUAUAAAGCUACACAAGGUAGUGGUGAGAGGAUUAAAAUGCUAAAUAUGACAUACGGUUAUAUCUAGAUCUAACGGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402951.1	ncRNA:24   CCAGGCAAUCUAGAUCUAUAUUGG   1   ***|*|||||||||||||*||||* targets:122   UUACGGUUAGAUCUAGAUCUAACG   145 Target Full Sequence	2.5	Sequence 1076 from Patent EP2074227	NA	coding protein	psRNATarget
HI402958.1	ncRNA:24   CCAGGCAAUCUAGAUCUAUAUUGG   1   ***|*|||||||||||||*||||* targets:122   UUACGGUUAGAUCUAGAUCUAACG   145 Target Full Sequence	2.5	Sequence 1083 from Patent EP2074227	NA	coding protein	psRNATarget
JB163412.1	ncRNA:24   CCAGGCAAUCUAGAUCUAUAUUGG   1   ***|*|||||||||||||*||||* targets:122   UUACGGUUAGAUCUAGAUCUAACG   145 Target Full Sequence	2.5	Sequence 1076 from Patent EP2559767	NA	coding protein	psRNATarget
JB163419.1	ncRNA:24   CCAGGCAAUCUAGAUCUAUAUUGG   1   ***|*|||||||||||||*||||* targets:122   UUACGGUUAGAUCUAGAUCUAACG   145 Target Full Sequence	2.5	Sequence 1083 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235081.1	ncRNA:24   CCAGGCAAUCUAGAUCUAUAUUGG   1   ***|*|||||||||||||*||||* targets:122   UUACGGUUAGAUCUAGAUCUAACG   145 Target Full Sequence	2.5	Sequence 1076 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235088.1	ncRNA:24   CCAGGCAAUCUAGAUCUAUAUUGG   1   ***|*|||||||||||||*||||* targets:122   UUACGGUUAGAUCUAGAUCUAACG   145 Target Full Sequence	2.5	Sequence 1083 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008663308.2	ncRNA:24   CCAGGCAAUCUAGAUCUAUAUUGG   1   *|||-|||||||||||||*||||* targets:3118   CGUC-GUUAGAUCUAGAUUUAACA   3140 Target Full Sequence	2.5	PREDICTED: Zea mays Nuclear pore complex protein NUP88 (si486016f12b), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544923.1	ncRNA:24   CCAGGCAAUCUAGAUCUAUAUUGG   1   *|||-|||||||||||||*||||* targets:3473   CGUC-GUUAGAUCUAGAUUUAACA   3495 Target Full Sequence	2.5	PREDICTED: Zea mays Nuclear pore complex protein NUP88 (si486016f12b), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544922.1	ncRNA:24   CCAGGCAAUCUAGAUCUAUAUUGG   1   *|||-|||||||||||||*||||* targets:3498   CGUC-GUUAGAUCUAGAUUUAACA   3520 Target Full Sequence	2.5	PREDICTED: Zea mays Nuclear pore complex protein NUP88 (si486016f12b), transcript variant X1, mRNA	NA	coding protein	psRNATarget