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BaseInfo

ncRNA ID	novel_zma_miR390
Species	Zea mays
Class	miRNA
Genome position	Chr6:112721908-112721973 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089711
Length	24
Mature sequence(if miRNA)	1 - GAGCGACAAAUAUUCGAGAACGGA - 24
Stem-loop(if miRNA)	--       --U          GUU        A   CGUUUUU   UAUUUGUCGC   UUAGUUUA A   |||||||   ||||||||||   ||||||||   GCAAGAG   AUAAACAGCG   GAUUAAAU A AG       CUU          AGC        A
Stem-loop sequence	CGUUUUUUUAUUUGUCGCGUUUUAGUUUAAAAAUAAAUUAGCGAGCGACAAAUAUUCGAGAACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ050211.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||||||| targets:41   UCCGUUCUCGAAUAUUUGUCGCUC   64 Target Full Sequence	0.0	TSA: Zea mays contig51330, mRNA sequence	NA	coding protein	psRNATarget
EZ110367.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||||||| targets:428   UCCGUUCUCGAAUAUUUGUCGCUC   451 Target Full Sequence	0.0	TSA: Zea mays contig46027, mRNA sequence	NA	coding protein	psRNATarget
EZ054003.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   ||=||||||||||||||||||||| targets:97   UCUGUUCUCGAAUAUUUGUCGCUC   120 Target Full Sequence	0.0	TSA: Zea mays contig55125, mRNA sequence	NA	coding protein	psRNATarget
EZ091447.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||=|||| targets:70   UCCGUUCUCGAAUAUUUGUUGCUC   93 Target Full Sequence	1.5	TSA: Zea mays contig27095, mRNA sequence	NA	coding protein	psRNATarget
XM_008676081.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||||||* targets:2495   UCCGUUCUCGAAUAUUUGUCGCUG   2518 Target Full Sequence	1.0	PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676082.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||||||* targets:2499   UCCGUUCUCGAAUAUUUGUCGCUG   2522 Target Full Sequence	1.0	PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001151933.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||||=|= targets:100   UCCGUUCUCGAAUAUUUGUCGUUU   123 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278762 (LOC100278762), mRNA	NA	coding protein	psRNATarget
EU975204.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||||=|= targets:100   UCCGUUCUCGAAUAUUUGUCGUUU   123 Target Full Sequence	2.5	Zea mays clone 484326 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU952914.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |=|||||||||||||||||||=|| targets:982   UUCGUUCUCGAAUAUUUGUCGUUC   1005 Target Full Sequence	1.5	Zea mays clone 1357151 mRNA sequence	NA	coding protein	psRNATarget
NM_001352895.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |=|||||||||||||||||||=|| targets:1575   UUCGUUCUCGAAUAUUUGUCGUUC   1598 Target Full Sequence	1.5	Zea mays homeobox-leucine zipper protein HOX23 (LOC103626227), mRNA	NA	coding protein	psRNATarget
BT017193.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||||=|* targets:959   UCCGUUCUCGAAUAUUUGUCGUUG   982 Target Full Sequence	2.5	Zea mays clone EL01N0371C09.c mRNA sequence	NA	coding protein	psRNATarget
EU965353.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||||=|* targets:1027   UCCGUUCUCGAAUAUUUGUCGUUG   1050 Target Full Sequence	2.5	Zea mays clone 285514 CAPIP1 mRNA, complete cds	NA	coding protein	psRNATarget
BT040068.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||||=|* targets:922   UCCGUUCUCGAAUAUUUGUCGUUG   945 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0063E17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147497.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||||=|* targets:922   UCCGUUCUCGAAUAUUUGUCGUUG   945 Target Full Sequence	2.5	Zea mays CAPIP1 (LOC100273048), mRNA	NA	coding protein	psRNATarget
AY112516.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||*|||||||||||||||||||| targets:43   UCCCUUCUCGAAUAUUUGUCGCUC   66 Target Full Sequence	0.0	Zea mays CL66304_1 mRNA sequence	NA	coding protein	psRNATarget
AY110588.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||||||||||||*|||| targets:153   UCCGUUCUCGAAUAUUUGUAGCUC   176 Target Full Sequence	1.5	Zea mays CL8418_1 mRNA sequence	NA	coding protein	psRNATarget
BT042256.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   ||||||||||||||||||||||*| targets:852   UCCGUUCUCGAAUAUUUGUCGCCC   875 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0181G14 mRNA, complete cds	NA	coding protein	psRNATarget
EU965986.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   ||||||||||||||||||||||*= targets:770   UCCGUUCUCGAAUAUUUGUCGCAU   793 Target Full Sequence	2.5	Zea mays clone 290591 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654524.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   ||||||||||||||||||||||*= targets:1095   UCCGUUCUCGAAUAUUUGUCGCAU   1118 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor UPBEAT1 (LOC100276975), mRNA	NA	coding protein	psRNATarget
BT061281.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   ||||||||||||||||||||||*= targets:1378   UCCGUUCUCGAAUAUUUGUCGCCU   1401 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0131A16 mRNA, complete cds	NA	coding protein	psRNATarget
EZ049723.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |=||||||||||||||||||||*| targets:54   UUCGUUCUCGAAUAUUUGUCGCCC   77 Target Full Sequence	1.5	TSA: Zea mays contig50841, mRNA sequence	NA	coding protein	psRNATarget
EZ071175.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   ||||||||=|||||||||||||*| targets:100   UCCGUUCUUGAAUAUUUGUCGCCC   123 Target Full Sequence	2.5	TSA: Zea mays contig06812, mRNA sequence	NA	coding protein	psRNATarget
XM_008647986.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   ||=|||||||||||||||||||** targets:1420   UCUGUUCUCGAAUAUUUGUCGCCG   1443 Target Full Sequence	2.5	PREDICTED: Zea mays putative disease resistance RPP13-like protein 3 (LOC103627692), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001157971.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   *|||||||||||||||||||||*| targets:2256   CCCGUUCUCGAAUAUUUGUCGCCC   2279 Target Full Sequence	1.5	Zea mays zeaxanthin epoxidase (LOC100285076), mRNA	NA	coding protein	psRNATarget
EU970775.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   *|||||||||||||||||||||*| targets:2256   CCCGUUCUCGAAUAUUUGUCGCCC   2279 Target Full Sequence	1.5	Zea mays clone 350572 zeaxanthin epoxidase mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546478.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   *|||||||||||||||||||||*| targets:2925   CCCGUUCUCGAAUAUUUGUCGCCC   2948 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546479.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   *|||||||||||||||||||||*| targets:2925   CCCGUUCUCGAAUAUUUGUCGCCC   2948 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ084539.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||||||||*||||||||||||*| targets:24   UCCGUUCUCAAAUAUUUGUCGCCC   47 Target Full Sequence	2.5	TSA: Zea mays contig20183, mRNA sequence	NA	coding protein	psRNATarget
EZ113291.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||*||||||||||||||||||*| targets:89   UCCCUUCUCGAAUAUUUGUCGCCC   112 Target Full Sequence	1.5	TSA: Zea mays contig48952, mRNA sequence	NA	coding protein	psRNATarget
AY110930.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   ||||||*|||||||||||||||*| targets:201   UCCGUUAUCGAAUAUUUGUCGCCC   224 Target Full Sequence	2.5	Zea mays CL27955_1 mRNA sequence	NA	coding protein	psRNATarget
EZ109960.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   *=||||*||||||||||||||||= targets:149   CUCGUUAUCGAAUAUUUGUCGCUU   172 Target Full Sequence	2.0	TSA: Zea mays contig45620, mRNA sequence	NA	coding protein	psRNATarget
XM_008658000.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |||*||||||||||||||||*||* targets:1025   UCCAUUCUCGAAUAUUUGUCUCUG   1048 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103635584 (LOC103635584), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU940764.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |==||||||*||||||||||*||| targets:506   UUUGUUCUCCAAUAUUUGUCCCUC   529 Target Full Sequence	2.5	Zea mays clone 1062220 mRNA sequence	NA	coding protein	psRNATarget
BT017839.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |==||||||*||||||||||||*| targets:1075   UUUGUUCUCAAAUAUUUGUCGCCC   1098 Target Full Sequence	2.5	Zea mays clone EL01N0509G09.c mRNA sequence	NA	coding protein	psRNATarget
EU974460.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGCGAG   1   |==||||||*||||||||||||*| targets:1077   UUUGUUCUCAAAUAUUUGUCGCCC   1100 Target Full Sequence	2.5	Zea mays clone 449839 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget