ncRNA ID | novel_zma_miR388 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr4:81203118-81203226 [-] |
Reference genome | RefGen_v4 |
Source | SRR1583943;SRR1583944;SRR2638137;SRR2647221;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647390;SRR2647391 |
Length | 24 |
Mature sequence(if miRNA) | 86 - AGCUGACUCGCUCUUUUCACGAGC - 109 |
Stem-loop(if miRNA) |
--     A     U  UUUCA  -   C  AAAAACA               C   A  A   AGCUG CUCGC CU     CG AGC AC       GGCUCGGCUCGGGCU GUU UG U   ||||| ||||| ||     || ||| ||       ||||||||||||||| ||| || C   UCGAC GAGCG GA     GC UCG UG       CCGAGCCGAGCCUGG CGA GC G GC     C     C  -----  G   C  -----AG               C   -  U |
Stem-loop sequence | AGCUGACUCGCUCUUUUCACGAGCCACAAAAACAGGCUCGGCUCGGGCUCGUUAUGAUCGUCGAGCCGGUCCGAGCCGAGCCGAGUCGCUGCGAGCGCGAGCCAGCUCG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020547439.1 |
|
1.5 | PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA | NA | coding protein | psRNATarget |