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BaseInfo

ncRNA ID novel_zma_miR388
Species Zea mays
Class miRNA
Genome position Chr4:81203118-81203226 [-]
Reference genome RefGen_v4
Source SRR1583943;SRR1583944;SRR2638137;SRR2647221;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647390;SRR2647391
Length 24
Mature sequence(if miRNA) 86 - AGCUGACUCGCUCUUUUCACGAGC - 109
Stem-loop(if miRNA) --     A     U  UUUCA  -   C  AAAAACA               C   A  A
  AGCUG CUCGC CU     CG AGC AC       GGCUCGGCUCGGGCU GUU UG U
  ||||| ||||| ||     || ||| ||       ||||||||||||||| ||| || C
  UCGAC GAGCG GA     GC UCG UG       CCGAGCCGAGCCUGG CGA GC G
GC     C     C  -----  G   C  -----AG               C   -  U
Stem-loop sequence AGCUGACUCGCUCUUUUCACGAGCCACAAAAACAGGCUCGGCUCGGGCUCGUUAUGAUCGUCGAGCCGGUCCGAGCCGAGCCGAGUCGCUGCGAGCGCGAGCCAGCUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547439.1
ncRNA:24   CGAGCACUUUUCUCGCUCAGUCGA   1
  |||||||||||||||||||||*||
targets:2586   GCUCGUGAAAAGAGCGAGUCAACU   2609

1.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget