Search result

BaseInfo

ncRNA ID novel_zma_miR386
Species Zea mays
Class miRNA
Genome position Chr6:124108614-124108667 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089714;SRR2089698;SRR2089703;SRR2089706
Length 24
Mature sequence(if miRNA) 1 - AGAAGGUGGGACGAGAAUGGGCUG - 24
Stem-loop(if miRNA) --    -     -A     U  C     G
  GUCC UUCUC  CCCAC CU UCUGU C
  |||| |||||  ||||| || |||||
  CGGG AAGAG  GGGUG GA AGACG U
GU    U     CA     -  -     C
Stem-loop sequence GUCCUUCUCACCCACUCUCUCUGUGCUCGCAGAAGGUGGGACGAGAAUGGGCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU944746.1
ncRNA:24   GUCGGGUAAGAGCAGGGUGGAAGA   1
  ||*|*|||||*|||||||||||||
targets:29   CAACACAUUCCCGUCCCACCUUCU   52

1.0 Zea mays clone 228825 mRNA sequence NA coding protein psRNATarget
EU940973.1
ncRNA:24   GUCGGGUAAGAGCAGGGUGGAAGA   1
  ||*|*|||||*|||||||||||||
targets:1552   CAACACAUUCCCGUCCCACCUUCU   1575

1.0 Zea mays clone 1225229 mRNA sequence NA coding protein psRNATarget
EU950647.1
ncRNA:24   GUCGGGUAAGAGCAGGGUGGAAGA   1
  ||*|*|||||*|||||||=|||||
targets:29   CAACACAUUCCCGUCCCAUCUUCU   52

2.5 Zea mays clone 505758 mRNA sequence NA coding protein psRNATarget