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BaseInfo

ncRNA ID	novel_zma_miR385
Species	Zea mays
Class	miRNA
Genome position	Chr6:126551675-126551757 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089712;SRR5451003;SRR2089708
Length	23
Mature sequence(if miRNA)	61 - UUGAGUGAGAUUGAGUCGGUUUA - 83
Stem-loop(if miRNA)	--    -   AG      U   -U    -----  CA    A   U   UUGA GUG  AUUGAG CGG  UUAA     AU  UAGC AGU A   |||| |||  |||||| |||  ||||     ||  |||| |||   AACU CAC  UAACUU GCC  AAUU     UA  AUUG UUA A CU    U   -A      -   UU    AUGCU  AA    C   A
Stem-loop sequence	UUGAGUGAGAUUGAGUCGGUUUAAAUCAUAGCAAGUUAAAAUUCGUUAAAAUUCGUAUUAAUUCCGUUCAAUACACUUCAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001174368.1	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   |||||=*|||||||||||||||| targets:1437   UAAACUCACUCAAUCUCACUCAA   1459 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100381539), mRNA	NA	coding protein	psRNATarget
BT061560.1	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   |||||=*|||||||||||||||| targets:1437   UAAACUCACUCAAUCUCACUCAA   1459 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675817.2	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   ||||=||||||||||*||||||| targets:4051   UAAAUCGACUCAAUCCCACUCAA   4073 Target Full Sequence	2.5	PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT086633.1	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   ||||||*|=*||||||||||||| targets:449   UAAACCCAUCCAAUCUCACUCAA   471 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
BT063416.1	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   ||||||*|=*||||||||||||| targets:2074   UAAACCCAUCCAAUCUCACUCAA   2096 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   ||||||*|=*||||||||||||| targets:2146   UAAACCCAUCCAAUCUCACUCAA   2168 Target Full Sequence	3.0	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   ||||||*|=*||||||||||||| targets:2147   UAAACCCAUCCAAUCUCACUCAA   2169 Target Full Sequence	3.0	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   ||||||*|=*||||||||||||| targets:2275   UAAACCCAUCCAAUCUCACUCAA   2297 Target Full Sequence	3.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   ||||||*|=*||||||||||||| targets:2282   UAAACCCAUCCAAUCUCACUCAA   2304 Target Full Sequence	3.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   ||||||*|=*||||||||||||| targets:2342   UAAACCCAUCCAAUCUCACUCAA   2364 Target Full Sequence	3.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI405893.1	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   *|||||*|=*||||||||||||| targets:73   CAAACCCAUCCAAUCUCACUCAA   95 Target Full Sequence	3.0	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
JB166354.1	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   *|||||*|=*||||||||||||| targets:73   CAAACCCAUCCAAUCUCACUCAA   95 Target Full Sequence	3.0	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:23   AUUUGGCUGAGUUAGAGUGAGUU   1   *|||||*|=*||||||||||||| targets:73   CAAACCCAUCCAAUCUCACUCAA   95 Target Full Sequence	3.0	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget