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BaseInfo

ncRNA ID novel_zma_miR382
Species Zea mays
Class miRNA
Genome position Chr6:143320761-143320890 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR1997865;SRR1997866;SRR2089699;SRR2089700;SRR2089706;SRR2089707
Length 21
Mature sequence(if miRNA) 110 - AUUAUGGUGGAAGGGUAGGAG - 130
Stem-loop(if miRNA) --            G    G       A            A                AAAUAAGC
  AUUAUGGUGGAA GGUA GAGGGUA AAUGUCAUUUUG GAUCACAAAUAAGCUA        U
  |||||||||||| |||| ||||||| |||||||||||| ||||||||||||||||
  UAAUACCACCUU CCAU CUCCCAU UUAUAGUGAAAU CUGGUGUUUAUUCGAU        A
CC            A    A       A            C                CAUAACCC
Stem-loop sequence AUUAUGGUGGAAGGGUAGGAGGGUAAAAUGUCAUUUUGAGAUCACAAAUAAGCUAAAAUAAGCUACCCAAUACUAGCUUAUUUGUGGUCCUAAAGUGAUAUUAUACCCUCAUACCAUUCCACCAUAAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT087535.1
ncRNA:21   GAGGAUGGGAAGGUGGUAUUA   1
  |||||==||||||||||||||
targets:190   CUCCUGUCCUUCCACCAUAAU   210

2.0 Zea mays full-length cDNA clone ZM_BFb0104B17 mRNA, complete cds NA coding protein psRNATarget
BT036602.1
ncRNA:21   GAGGAUGGGAAGGUGGUAUUA   1
  ||=||||||||*|||||||||
targets:1067   CUUCUACCCUUACACCAUAAU   1087

2.5 Zea mays full-length cDNA clone ZM_BFb0125H01 mRNA, complete cds NA coding protein psRNATarget
NM_001139196.1
ncRNA:21   GAGGAUGGGAAGGUGGUAUUA   1
  ||=||||||||*|||||||||
targets:1067   CUUCUACCCUUACACCAUAAU   1087

2.5 Zea mays OSJNBa0029H02.27-like protein (pco137821), mRNA NA coding protein psRNATarget