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BaseInfo

ncRNA ID novel_zma_miR380
Species Zea mays
Class miRNA
Genome position Chr6:144803090-144803159 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089711;SRR2089708
Length 24
Mature sequence(if miRNA) 47 - GAGGAGCUGUUUUAAGAGAGGGUG - 70
Stem-loop(if miRNA) -- A    C      ---        G    GC GAU
  G GGAG UGUUUU   AAGAGAGG UGGG  C   U
  | |||| ||||||   |||||||| ||||  |   U
  C CCUC GCAAAA   UUCUUUCC ACCC  G   U
AA -    A      AAU        -    UA AUU
Stem-loop sequence GAGGAGCUGUUUUAAGAGAGGGUGGGGCCGAUUUUUUAGAUCCCACCUUUCUUUAAAAAACGACUCCCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU947404.1
ncRNA:24   GUGGGAGAGAAUUUUGUCGAGGAG   1
  ||||||=*||||||||||||||||
targets:605   CACCCUUCCUUAAAACAGCUCCUC   628

2.0 Zea mays clone 342391 mRNA sequence NA coding protein psRNATarget