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BaseInfo

ncRNA ID novel_zma_miR379
Species Zea mays
Class miRNA
Genome position Chr6:146930187-146930254 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089714;SRR1997865;SRR1997866
Length 24
Mature sequence(if miRNA) 45 - GCUCUCUGCGGAGGCGUGGACGGU - 68
Stem-loop(if miRNA) --    U     -G   -       G     C   A
  GCUC CUGCG  AGG CGUGGAC GUCCG GGC C
  |||| |||||  ||| ||||||| ||||| |||
  CGAG GACGC  UCC GCACCUG CAGGC CCG A
AG    -     GG   A       G     -   G
Stem-loop sequence GCUCUCUGCGGAGGCGUGGACGGUCCGCGGCACAGGCCCGGACGGUCCACGACCUGGCGCAGGAGCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT039435.1
ncRNA:24   UGGCAGGUGCGGAGGCGUCUCUCG   1
  |||||||=||||||||||||||||
targets:306   ACCGUCCGCGCCUCCGCAGAGAGC   329

1.0 Zea mays full-length cDNA clone ZM_BFc0013G13 mRNA, complete cds NA coding protein psRNATarget
NM_001349036.1
ncRNA:24   UG-GCAGGUGCGGAGGCGUCUCUCG   1
  ||-||*||||||||||||*|||||*
targets:95   ACGCGCCCACGCCUCCGCUGAGAGA   119

2.5 Zea mays Protein NRT1/ PTR FAMILY 5.10 (LOC100382172), mRNA NA coding protein psRNATarget