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BaseInfo

ncRNA ID novel_zma_miR377
Species Zea mays
Class miRNA
Genome position Chr6:153487031-153487112 [-]
Reference genome RefGen_v4
Source SRR2089709
Length 21
Mature sequence(if miRNA) 62 - UGAGGGGGAUUGAAGGGGAUU - 82
Stem-loop(if miRNA) --  AG                                  A
  UG  GGGGAUUGAAGGGGAUUAAAUCCCCUUCUAUUUA A
  ||  ||||||||||||||||||||||||||||||||||
  AC  CCCCUAACUUCUCUUAAUUUAGGGGAGGAUAAGU A
UA  CU                                  U
Stem-loop sequence UGAGGGGGAUUGAAGGGGAUUAAAUCCCCUUCUAUUUAAAAUUGAAUAGGAGGGGAUUUAAUUCUCUUCAAUCCCCUCCAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI406037.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:92   AAUCCCCUUCAAUCCCCCUCA   112

0.0 Sequence 4162 from Patent EP2074227 NA coding protein psRNATarget
JB166498.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:92   AAUCCCCUUCAAUCCCCCUCA   112

0.0 Sequence 4162 from Patent EP2559767 NA coding protein psRNATarget
LQ238167.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:92   AAUCCCCUUCAAUCCCCCUCA   112

0.0 Sequence 4162 from Patent EP2985353 NA coding protein psRNATarget
EU960473.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:99   AAUCCCCUUCAAUCCCCCUCA   119

0.0 Zea mays clone 225209 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU963775.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:232   AAUCCCCUUCAAUCCCCCUCA   252

0.0 Zea mays clone 272562 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU942334.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:240   AAUCCCCUUCAAUCCCCCUCA   260

0.0 Zea mays clone 1480331 mRNA sequence NA coding protein psRNATarget
EU961196.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:374   AAUCCCCUUCAAUCCCCCUCA   394

0.0 Zea mays clone 233383 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU964415.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:758   AAUCCCCUUCAAUCCCCCUCA   778

0.0 Zea mays clone 278711 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001245881.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:758   AAUCCCCUUCAAUCCCCCUCA   778

0.0 Zea mays hypothetical protein (LOC100276749), mRNA NA coding protein psRNATarget
BT069598.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:853   AAUCCCCUUCAAUCCCCCUCA   873

0.0 Zea mays full-length cDNA clone ZM_BFb0180C20 mRNA, complete cds NA coding protein psRNATarget
BT069064.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:821   AAUCCCCUUCAAUCCCCCUCA   841

0.0 Zea mays full-length cDNA clone ZM_BFb0160O17 mRNA, complete cds NA coding protein psRNATarget
BT065224.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:804   AAUCCCCUUCAAUCCCCCUCA   824

0.0 Zea mays full-length cDNA clone ZM_BFb0046E21 mRNA, complete cds NA coding protein psRNATarget
NM_001150473.2
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:859   AAUCCCCUUCAAUCCCCCUCA   879

0.0 Zea mays hypothetical protein (LOC100276749), mRNA NA coding protein psRNATarget
BT062705.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:859   AAUCCCCUUCAAUCCCCCUCA   879

0.0 Zea mays full-length cDNA clone ZM_BFb0335N06 mRNA, complete cds NA coding protein psRNATarget
XM_008678753.2
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:904   AAUCCCCUUCAAUCCCCCUCA   924

0.0 PREDICTED: Zea mays hypothetical protein (LOC100276749), transcript variant X1, mRNA NA coding protein psRNATarget
EU964521.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||||||||
targets:920   AAUCCCCUUCAAUCCCCCUCA   940

0.0 Zea mays clone 279503 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT054737.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  ||||||||||||||||=||||
targets:189   AAUCCCCUUCAAUCCCUCUCA   209

1.5 Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds NA coding protein psRNATarget
BT061531.2
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  ||*||||||||||||||||||
targets:841   AAACCCCUUCAAUCCCCCUCA   861

1.0 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
XM_020552749.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  ||||||||*||||||||||||
targets:3271   AAUCCCCUCCAAUCCCCCUCA   3291

1.5 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
NM_001176181.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  ||||||||*||||||||||||
targets:1592   AAUCCCCUCCAAUCCCCCUCA   1612

1.5 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  ||||||||*||||||||||||
targets:1592   AAUCCCCUCCAAUCCCCCUCA   1612

1.5 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
EZ083462.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  ||||||=|*||||||||||||
targets:31   AAUCCCUUCCAAUCCCCCUCA   51

2.5 TSA: Zea mays contig19106, mRNA sequence NA coding protein psRNATarget
EU968340.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||*||||||||||=||||
targets:719   AAUCCACUUCAAUCCCUCUCA   739

2.5 Zea mays clone 319179 mRNA sequence NA coding protein psRNATarget
XM_020543383.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  **|||||||||||||||=|||
targets:230   UUUCCCCUUCAAUCCCCUUCA   250

1.5 PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA NA coding protein psRNATarget
EZ049235.1
ncRNA:19   AGGGGAAGUUAGGGGGAGU   1
  |||||||||||||||=||*
targets:1   UCCCCUUCAAUCCCCUUCU   19

2.5 TSA: Zea mays contig50353, mRNA sequence NA coding protein psRNATarget
EU942361.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||*||||||||||*||||
targets:514   AAUCCACUUCAAUCCCACUCA   534

2.5 Zea mays clone 1487121 mRNA sequence NA coding protein psRNATarget
BT035012.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||*||||||*||||||
targets:1600   AAUCCCCCUCAAUCACCCUCA   1620

2.5 Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds NA coding protein psRNATarget
NM_001138093.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  |||||||*||||||*||||||
targets:1600   AAUCCCCCUCAAUCACCCUCA   1620

2.5 Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA NA coding protein psRNATarget
XM_020551510.1
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  ||*|||||*||||||||||||
targets:1566   AAACCCCUCCAAUCCCCCUCA   1586

2.5 PREDICTED: Zea mays putative ACT-domain containing protein kinase family protein (LOC100280199), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008680349.2
ncRNA:21   UUAGGGGAAGUUAGGGGGAGU   1
  ||*||||*|||||||||||||
targets:1961   AAACCCCCUCAAUCCCCCUCA   1981

2.0 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
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