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BaseInfo

ncRNA ID novel_zma_miR374
Species Zea mays
Class miRNA
Genome position Chr6:160388352-160388449 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089714;SRR2089715;SRR2089699;SRR2089701;SRR2089704;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - AAUGUCAUAACACCGUUGGAUACA - 24
Stem-loop(if miRNA) --                  UC    UUUUU    AAC   A  -AA    A
  UAUCUAACGGUGUUGUGG  UUUU     AAUG   AGC CC   CAUG A
  ||||||||||||||||||  ||||     ||||   ||| ||   |||| G
  AUAGGUUGCCACAAUACU  AAAA     UUAU   UCG GG   GUGC A
AC                  GU    --UGU    ---   -  AGG    G
Stem-loop sequence UAUCUAACGGUGUUGUGGUCUUUUUUUUUAAUGAACAGCACCAACAUGAAGAGCGUGGGAGGGCUUAUUUGUAAAAUGUCAUAACACCGUUGGAUACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008664717.2
ncRNA:24   ACAUAGGUUGCCACAAUACUGUAA   1
  ||||||=|||||||||||||||||
targets:2596   UGUAUCUAACGGUGUUAUGACAUU   2619

1.0 PREDICTED: Zea mays tRNA (cytosine(34)-C(5))-methyltransferase (LOC103641349), transcript variant X5, mRNA NA coding protein psRNATarget