Search result

BaseInfo

ncRNA ID osa-miR5788
Species Oryza sativa
Class miRNA
Genome position Chr3:30006944-30007059 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 20 - UGGAUGUGACAUACUCUAGUA - 40
Stem-loop(if miRNA)        -    U    A               CU       A             GA
AAAAAAA CGAU CUAG ACUGGAUGUGACAUA  CUAGUAC AUGAAUCUGGAUA  G
||||||| |||| |||| |||||||||||||||  ||||||| |||||||||||||
UUUUUUU GUUA GAUC UGACCUACACUGUAU  GAUCAUG UGCUUAGACCUAU  G
       A    -    A               AG       A             AU
Stem-loop sequence AAAAAAACGAUUCUAGAACUGGAUGUGACAUACUCUAGUACAAUGAAUCUGGAUAGAGGUAUAUCCAGAUUCGUAGUACUAGGAUAUGUCACAUCCAGUACUAGAUUGAUUUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK061182.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  |||||||*|||||||||||||
targets:887   UACUAGAAUAUGUCACAUCCA   907

1.0 Oryza sativa Japonica Group cDNA clone:006-209-D09, full insert sequence NA coding protein psRNATarget
XM_015759388.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  |||||||*|||||||||||||
targets:463   UACUAGAAUAUGUCACAUCCA   483

1.0 PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA ent-cassadiene C2-hydroxylase-like(LOC4348721) coding protein psRNATarget
AK288796.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  |||||||*|||||||||||||
targets:606   UACUAGAAUAUGUCACAUCCA   626

1.0 Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence NA coding protein psRNATarget
HI403880.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  ||=||||*|||||||||||||
targets:70   UAUUAGAAUAUGUCACAUCCA   90

2.0 Sequence 2005 from Patent EP2074227 NA coding protein psRNATarget
LQ236010.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  ||=||||*|||||||||||||
targets:70   UAUUAGAAUAUGUCACAUCCA   90

2.0 Sequence 2005 from Patent EP2985353 NA coding protein psRNATarget
JB164341.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  ||=||||*|||||||||||||
targets:70   UAUUAGAAUAUGUCACAUCCA   90

2.0 Sequence 2005 from Patent EP2559767 NA coding protein psRNATarget
XM_015769592.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  ||=||||*|||||||||||||
targets:402   UAUUAGAAUAUGUCACAUCCA   422

2.0 PREDICTED: Oryza sativa Japonica Group translation machinery-associated protein 7-like (LOC107277315), mRNA translation machinery-associated protein 7-like(LOC107277315) coding protein psRNATarget
XM_015775487.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  |||||||*|||||||||||=|
targets:2621   UACUAGAAUAUGUCACAUCUA   2641

2.5 PREDICTED: Oryza sativa Japonica Group histone-lysine N-methyltransferase EZ3 (LOC4332612), transcript variant X2, mRNA histone-lysine N-methyltransferase EZ3(LOC4332612) coding protein psRNATarget
XM_015775486.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  |||||||*|||||||||||=|
targets:3192   UACUAGAAUAUGUCACAUCUA   3212

2.5 PREDICTED: Oryza sativa Japonica Group histone-lysine N-methyltransferase EZ3 (LOC4332612), transcript variant X1, mRNA histone-lysine N-methyltransferase EZ3(LOC4332612) coding protein psRNATarget
AK288458.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  |||||||*|=|||||||||||
targets:1371   UACUAGAAUGUGUCACAUCCA   1391

2.5 Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence NA coding protein psRNATarget
JB164742.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  *||||||*|||||||||||||
targets:49   CACUAGAAUAUGUCACAUCCA   69

1.0 Sequence 2406 from Patent EP2559767 NA coding protein psRNATarget
HI404281.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  *||||||*|||||||||||||
targets:49   CACUAGAAUAUGUCACAUCCA   69

1.0 Sequence 2406 from Patent EP2074227 NA coding protein psRNATarget
LQ236411.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  *||||||*|||||||||||||
targets:49   CACUAGAAUAUGUCACAUCCA   69

1.0 Sequence 2406 from Patent EP2985353 NA coding protein psRNATarget
LQ236081.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  |||||||*||*||||||||||
targets:76   UACUAGAAUACGUCACAUCCA   96

2.5 Sequence 2076 from Patent EP2985353 NA coding protein psRNATarget
JB164412.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  |||||||*||*||||||||||
targets:76   UACUAGAAUACGUCACAUCCA   96

2.5 Sequence 2076 from Patent EP2559767 NA coding protein psRNATarget
HI403951.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  |||||||*||*||||||||||
targets:76   UACUAGAAUACGUCACAUCCA   96

2.5 Sequence 2076 from Patent EP2074227 NA coding protein psRNATarget
AK063369.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  |||||||*|||||||*|||||
targets:1025   UACUAGAAUAUGUCAAAUCCA   1045

2.5 Oryza sativa Japonica Group cDNA clone:001-114-E01, full insert sequence NA coding protein psRNATarget
XM_015794212.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  |||||||*|||||||*|||||
targets:1136   UACUAGAAUAUGUCAAAUCCA   1156

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325579 (LOC4325579), mRNA uncharacterized LOC4325579(LOC4325579) coding protein psRNATarget
JB164428.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  **|||||*|||||||||||||
targets:70   GUCUAGAAUAUGUCACAUCCA   90

1.0 Sequence 2092 from Patent EP2559767 NA coding protein psRNATarget
LQ236097.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  **|||||*|||||||||||||
targets:70   GUCUAGAAUAUGUCACAUCCA   90

1.0 Sequence 2092 from Patent EP2985353 NA coding protein psRNATarget
HI403967.1
ncRNA:21   AUGAUCUCAUACAGUGUAGGU   1
  **|||||*|||||||||||||
targets:70   GUCUAGAAUAUGUCACAUCCA   90

1.0 Sequence 2092 from Patent EP2074227 NA coding protein psRNATarget

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).
© 2017 OPP-ncRBASE. All rights reserved.