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BaseInfo

ncRNA ID	novel_zma_miR369
Species	Zea mays
Class	miRNA
Genome position	Chr6:166804907-166805015 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR5451003;SRR2089705
Length	24
Mature sequence(if miRNA)	86 - ACUAAAGUAGAAUAAAAUGGAGGG - 109
Stem-loop(if miRNA)	--     A                 AC        C      A       A      CUCCA UUUAUUCUAUUUUAGUC  UAAAUUGU AAAUAU GAAACUA AAUA   ||||| |||||||||||||||||  |||||||| |||||| ||||||| |||G   GAGGU AAAUAAGAUGAAAUCAG  AUUUAACG UUUAUA CUUUGAU UUGA GG     A                 AU        U      C       A
Stem-loop sequence	CUCCAAUUUAUUCUAUUUUAGUCACUAAAUUGUCAAAUAUAGAAACUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAGACUAAAGUAGAAUAAAAUGGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001112512.2	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||=||||||||||||=|||||| targets:1671   CCCUUCAUUUUAUUCUAUUUUAGU   1694 Target Full Sequence	1.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||*||||||||||||=|||||| targets:1574   CCCUACAUUUUAUUCUAUUUUAGU   1597 Target Full Sequence	1.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||=||||||||||||=|||||| targets:841   CCCUUCAUUUUAUUCUAUUUUAGU   864 Target Full Sequence	1.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||=||||||||||||=|||||| targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55 Target Full Sequence	1.5	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||=||||||||||||=|||||| targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55 Target Full Sequence	1.5	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||=||||||||||||=|||||| targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55 Target Full Sequence	1.5	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235180.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||=||||||||||||=|||||| targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55 Target Full Sequence	1.5	Sequence 1175 from Patent EP2985353	NA	coding protein	psRNATarget
HI403050.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||=||||||||||||=|||||| targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55 Target Full Sequence	1.5	Sequence 1175 from Patent EP2074227	NA	coding protein	psRNATarget
JB163511.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||=||||||||||||=|||||| targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55 Target Full Sequence	1.5	Sequence 1175 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   |||||||||||||||*|||||||| targets:2992   CCCUCCAUUUUAUUCCACUUUAGU   3015 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   |||||||||||||||*|||||||| targets:2603   CCCUCCAUUUUAUUCCACUUUAGU   2626 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   |||||||||||||||*|||||||| targets:485   CCCUCCAUUUUAUUCCACUUUAGU   508 Target Full Sequence	1.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||*||||||||||||=|||||| targets:74   CCCUACAUUUUAUUCUAUUUUAGU   97 Target Full Sequence	1.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   |||*=||||||||||||=|||||| targets:1571   CCCAUCAUUUUAUUCUAUUUUAGU   1594 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667360.2	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||*=|||||||||||=|||||| targets:1071   CCCUAUAUUUUAUUCUAUUUUAGU   1094 Target Full Sequence	2.5	PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   |||*=||||||||||||=|||||| targets:34   CCCAUCAUUUUAUUCUAUUUUAGU   57 Target Full Sequence	1.5	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
JB163501.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   |||*=||||||||||||=|||||| targets:34   CCCAUCAUUUUAUUCUAUUUUAGU   57 Target Full Sequence	1.5	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
HI403040.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   |||*=||||||||||||=|||||| targets:34   CCCAUCAUUUUAUUCUAUUUUAGU   57 Target Full Sequence	1.5	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008657966.2	ncRNA:23   GGAGGUAAAAUAAGAUGAAAUCA   1   |||*||||||||||||=|||||| targets:1   CCUACAUUUUAUUCUAUUUUAGU   23 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103635535 (LOC103635535), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546793.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||*||||||||||||*|||||| targets:3596   CCCUACAUUUUAUUCUAAUUUAGU   3619 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546794.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||*||||||||||||*|||||| targets:3559   CCCUACAUUUUAUUCUAAUUUAGU   3582 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546795.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||*||||||||||||*|||||| targets:3509   CCCUACAUUUUAUUCUAAUUUAGU   3532 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546796.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||*||||||||||||*|||||| targets:3434   CCCUACAUUUUAUUCUAAUUUAGU   3457 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||*||||||||||*|||||||| targets:1920   CCCUACAUUUUAUUCCACUUUAGU   1943 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552869.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   |||||||*|||||||*|||||||| targets:1662   CCCUCCAAUUUAUUCCACUUUAGU   1685 Target Full Sequence	2.5	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   |||||||*|||||||*|||||||| targets:23   CCCUCCAAUUUAUUCCACUUUAGU   46 Target Full Sequence	2.5	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018349.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||*||||||||||||*|||||| targets:590   CCCUACAUUUUAUUCUAAUUUAGU   613 Target Full Sequence	1.5	Zea mays clone EL01T0403E10.c mRNA sequence	NA	coding protein	psRNATarget
EU941753.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||||*||||||||||||*|||||| targets:35   CCCUACAUUUUAUUCUAAUUUAGU   58 Target Full Sequence	1.5	Zea mays clone 1469712 mRNA sequence	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||=|*||||||||||*|||||||| targets:1273   CCUUACAUUUUAUUCCACUUUAGU   1296 Target Full Sequence	1.5	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
JB167075.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||*||||*|||||||||=|||||| targets:160   CCAUCCACUUUAUUCUAUUUUAGU   183 Target Full Sequence	2.5	Sequence 4739 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238744.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||*||||*|||||||||=|||||| targets:160   CCAUCCACUUUAUUCUAUUUUAGU   183 Target Full Sequence	2.5	Sequence 4739 from Patent EP2985353	NA	coding protein	psRNATarget
HI406614.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||*||||*|||||||||=|||||| targets:160   CCAUCCACUUUAUUCUAUUUUAGU   183 Target Full Sequence	2.5	Sequence 4739 from Patent EP2074227	NA	coding protein	psRNATarget
JB169209.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||*||||*|||||||||=|||||| targets:6   CCAUCCACUUUAUUCUAUUUUAGU   29 Target Full Sequence	2.5	Sequence 6873 from Patent EP2559767	NA	coding protein	psRNATarget
HI408748.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||*||||*|||||||||=|||||| targets:6   CCAUCCACUUUAUUCUAUUUUAGU   29 Target Full Sequence	2.5	Sequence 6873 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240878.1	ncRNA:24   GGGAGGUAAAAUAAGAUGAAAUCA   1   ||*||||*|||||||||=|||||| targets:6   CCAUCCACUUUAUUCUAUUUUAGU   29 Target Full Sequence	2.5	Sequence 6873 from Patent EP2985353	NA	coding protein	psRNATarget