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BaseInfo

ncRNA ID novel_zma_miR368
Species Zea mays
Class miRNA
Genome position Chr6:159006807-159006869 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089715
Length 22
Mature sequence(if miRNA) 1 - UUUUUUUUAUUAGUCGCUGGAU - 22
Stem-loop(if miRNA) ---                            A
   UUUUUUUUAUUAGUCGCUGGAUAGUGCA A
   ||||||||||||||||||||||||||||
   AAGAAAAAUAAUCAGCGACCUAUCACGU A
GCA                            U
Stem-loop sequence UUUUUUUUAUUAGUCGCUGGAUAGUGCAAAAUUGCACUAUCCAGCGACUAAUAAAAAGAAACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166321.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||||||||||||||||||
targets:55   AUCCAGCGACUAAUAAAAAAAA   76

0.0 Sequence 3985 from Patent EP2559767 NA coding protein psRNATarget
LQ237990.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||||||||||||||||||
targets:55   AUCCAGCGACUAAUAAAAAAAA   76

0.0 Sequence 3985 from Patent EP2985353 NA coding protein psRNATarget
HI405860.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||||||||||||||||||
targets:55   AUCCAGCGACUAAUAAAAAAAA   76

0.0 Sequence 3985 from Patent EP2074227 NA coding protein psRNATarget
HI405828.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||||||||||||||||||
targets:50   AUCCAGCGACUAAUAAAAAAAA   71

0.0 Sequence 3953 from Patent EP2074227 NA coding protein psRNATarget
LQ237958.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||||||||||||||||||
targets:50   AUCCAGCGACUAAUAAAAAAAA   71

0.0 Sequence 3953 from Patent EP2985353 NA coding protein psRNATarget
JB166289.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||||||||||||||||||
targets:50   AUCCAGCGACUAAUAAAAAAAA   71

0.0 Sequence 3953 from Patent EP2559767 NA coding protein psRNATarget
XM_008664460.2
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:163   AUCCAGCGACUAAUAAAAAGAA   184

1.5 PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658752.2
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:2092   AUCCAGCGACUAAUAAAAAGAA   2113

1.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542418.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:2025   AUCCAGCGACUAAUAAAAAGAA   2046

1.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008675770.2
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:1858   AUCCAGCGACUAAUAAAAAGAA   1879

1.5 PREDICTED: Zea mays pectinesterase-like (LOC103650113), mRNA NA coding protein psRNATarget
XM_008656936.2
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:214   AUCCAGCGACUAAUAAAAAGAA   235

1.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669400.2
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:1650   AUCCAGCGACUAAUAAAAAGAA   1671

1.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA NA coding protein psRNATarget
EU970288.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:1373   AUCCAGCGACUAAUAAAAAGAA   1394

1.5 Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds NA coding protein psRNATarget
XM_008675381.2
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:1265   AUCCAGCGACUAAUAAAAAGAA   1286

1.5 PREDICTED: Zea mays probable WRKY transcription factor 48 (LOC103649650), mRNA NA coding protein psRNATarget
BT070166.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:814   AUCCAGCGACUAAUAAAAAGAA   835

1.5 Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds NA coding protein psRNATarget
NM_001328133.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:814   AUCCAGCGACUAAUAAAAAGAA   835

1.5 Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA NA coding protein psRNATarget
XM_008664463.2
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:143   AUCCAGCGACUAAUAAAAAGAA   164

1.5 PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X3, mRNA NA coding protein psRNATarget
JB166285.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:50   AUCCAGCGACUAAUAAAAAGAA   71

1.5 Sequence 3949 from Patent EP2559767 NA coding protein psRNATarget
LQ237954.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:50   AUCCAGCGACUAAUAAAAAGAA   71

1.5 Sequence 3949 from Patent EP2985353 NA coding protein psRNATarget
HI405824.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:50   AUCCAGCGACUAAUAAAAAGAA   71

1.5 Sequence 3949 from Patent EP2074227 NA coding protein psRNATarget
HI405842.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:47   AUCCAGCGACUAAUAAAAAGAA   68

1.5 Sequence 3967 from Patent EP2074227 NA coding protein psRNATarget
JB166303.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:47   AUCCAGCGACUAAUAAAAAGAA   68

1.5 Sequence 3967 from Patent EP2559767 NA coding protein psRNATarget
LQ237972.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:47   AUCCAGCGACUAAUAAAAAGAA   68

1.5 Sequence 3967 from Patent EP2985353 NA coding protein psRNATarget
JB163828.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:45   AUCCAGCGACUAAUAAAAAGAA   66

1.5 Sequence 1492 from Patent EP2559767 NA coding protein psRNATarget
JB163774.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:45   AUCCAGCGACUAAUAAAAAGAA   66

1.5 Sequence 1438 from Patent EP2559767 NA coding protein psRNATarget
LQ235497.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:45   AUCCAGCGACUAAUAAAAAGAA   66

1.5 Sequence 1492 from Patent EP2985353 NA coding protein psRNATarget
JB163835.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:45   AUCCAGCGACUAAUAAAAAGAA   66

1.5 Sequence 1499 from Patent EP2559767 NA coding protein psRNATarget
LQ235504.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:45   AUCCAGCGACUAAUAAAAAGAA   66

1.5 Sequence 1499 from Patent EP2985353 NA coding protein psRNATarget
HI403367.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:45   AUCCAGCGACUAAUAAAAAGAA   66

1.5 Sequence 1492 from Patent EP2074227 NA coding protein psRNATarget
HI403313.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:45   AUCCAGCGACUAAUAAAAAGAA   66

1.5 Sequence 1438 from Patent EP2074227 NA coding protein psRNATarget
HI403374.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:45   AUCCAGCGACUAAUAAAAAGAA   66

1.5 Sequence 1499 from Patent EP2074227 NA coding protein psRNATarget
LQ235443.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||||||||||||||||=||
targets:45   AUCCAGCGACUAAUAAAAAGAA   66

1.5 Sequence 1438 from Patent EP2985353 NA coding protein psRNATarget
XM_020544902.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||=||||||||||||=||
targets:3200   AUCCAGUGACUAAUAAAAAGAA   3221

2.5 PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544903.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||=||||||||||||=||
targets:3191   AUCCAGUGACUAAUAAAAAGAA   3212

2.5 PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA NA coding protein psRNATarget
BT037092.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||=||||||||||||=||
targets:1134   AUCCAGUGACUAAUAAAAAGAA   1155

2.5 Zea mays full-length cDNA clone ZM_BFb0154F16 mRNA, complete cds NA coding protein psRNATarget
NM_001143050.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||=||||||||||||=||
targets:1134   AUCCAGUGACUAAUAAAAAGAA   1155

2.5 Zea mays uncharacterized LOC100216637 (LOC100216637), mRNA NA coding protein psRNATarget
LQ237960.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||=|||||||||||||||=||
targets:50   AUCUAGCGACUAAUAAAAAGAA   71

2.5 Sequence 3955 from Patent EP2985353 NA coding protein psRNATarget
JB166291.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||=|||||||||||||||=||
targets:50   AUCUAGCGACUAAUAAAAAGAA   71

2.5 Sequence 3955 from Patent EP2559767 NA coding protein psRNATarget
HI405830.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||=|||||||||||||||=||
targets:50   AUCUAGCGACUAAUAAAAAGAA   71

2.5 Sequence 3955 from Patent EP2074227 NA coding protein psRNATarget
JB163846.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||=|||||||||||||||=||
targets:45   AUCUAGCGACUAAUAAAAAGAA   66

2.5 Sequence 1510 from Patent EP2559767 NA coding protein psRNATarget
LQ235515.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||=|||||||||||||||=||
targets:45   AUCUAGCGACUAAUAAAAAGAA   66

2.5 Sequence 1510 from Patent EP2985353 NA coding protein psRNATarget
HI403385.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||=|||||||||||||||=||
targets:45   AUCUAGCGACUAAUAAAAAGAA   66

2.5 Sequence 1510 from Patent EP2074227 NA coding protein psRNATarget
LQ235469.1
ncRNA:22   UA--GGUCGCUGAUUAUUUUUUUU   1
  ||--|||||||||||||||||=||
targets:37   AUUCCCAGCGACUAAUAAAAAGAA   60

1.5 Sequence 1464 from Patent EP2985353 NA coding protein psRNATarget
HI403339.1
ncRNA:22   UA--GGUCGCUGAUUAUUUUUUUU   1
  ||--|||||||||||||||||=||
targets:37   AUUCCCAGCGACUAAUAAAAAGAA   60

1.5 Sequence 1464 from Patent EP2074227 NA coding protein psRNATarget
JB163800.1
ncRNA:22   UA--GGUCGCUGAUUAUUUUUUUU   1
  ||--|||||||||||||||||=||
targets:37   AUUCCCAGCGACUAAUAAAAAGAA   60

1.5 Sequence 1464 from Patent EP2559767 NA coding protein psRNATarget
EZ061772.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||||*||||||||||=||
targets:234   AUCCAGCGCCUAAUAAAAAGAA   255

2.5 TSA: Zea mays contig62894, mRNA sequence NA coding protein psRNATarget
EU973473.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||*||||||||||||||=||
targets:699   AUCCCGCGACUAAUAAAAAGAA   720

2.5 Zea mays clone 399411 mRNA sequence NA coding protein psRNATarget
JB163755.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||=||||||*|||||||||||
targets:61   AUCUAGCGACAAAUAAAAAAAA   82

2.5 Sequence 1419 from Patent EP2559767 NA coding protein psRNATarget
HI403294.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||=||||||*|||||||||||
targets:61   AUCUAGCGACAAAUAAAAAAAA   82

2.5 Sequence 1419 from Patent EP2074227 NA coding protein psRNATarget
LQ235424.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||=||||||*|||||||||||
targets:61   AUCUAGCGACAAAUAAAAAAAA   82

2.5 Sequence 1419 from Patent EP2985353 NA coding protein psRNATarget
JB169084.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||*|||||||||||||=||
targets:59   AUCCAUCGACUAAUAAAAAGAA   80

2.5 Sequence 6748 from Patent EP2559767 NA coding protein psRNATarget
HI408623.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||*|||||||||||||=||
targets:59   AUCCAUCGACUAAUAAAAAGAA   80

2.5 Sequence 6748 from Patent EP2074227 NA coding protein psRNATarget
LQ240753.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |||||*|||||||||||||=||
targets:59   AUCCAUCGACUAAUAAAAAGAA   80

2.5 Sequence 6748 from Patent EP2985353 NA coding protein psRNATarget
JB163826.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |*|||||||||||||||||=||
targets:57   AGCCAGCGACUAAUAAAAAGAA   78

1.5 Sequence 1490 from Patent EP2559767 NA coding protein psRNATarget
JB163826.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  **=||||||||||||||||=||
targets:31   UGUCAGCGACUAAUAAAAAGAA   52

1.5 Sequence 1490 from Patent EP2559767 NA coding protein psRNATarget
LQ235495.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |*|||||||||||||||||=||
targets:57   AGCCAGCGACUAAUAAAAAGAA   78

1.5 Sequence 1490 from Patent EP2985353 NA coding protein psRNATarget
LQ235495.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  **=||||||||||||||||=||
targets:31   UGUCAGCGACUAAUAAAAAGAA   52

1.5 Sequence 1490 from Patent EP2985353 NA coding protein psRNATarget
HI403365.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |*|||||||||||||||||=||
targets:57   AGCCAGCGACUAAUAAAAAGAA   78

1.5 Sequence 1490 from Patent EP2074227 NA coding protein psRNATarget
HI403365.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  **=||||||||||||||||=||
targets:31   UGUCAGCGACUAAUAAAAAGAA   52

1.5 Sequence 1490 from Patent EP2074227 NA coding protein psRNATarget
EU942223.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||||||||*||||*||||||||
targets:354   AUCCAGCGUCUAAAAAAAAAAA   375

2.5 Zea mays clone 1478154 mRNA sequence NA coding protein psRNATarget
EZ073194.1
ncRNA:22   UA--GGUCGCUGAUUAUUUUUUUU   1
  ||--|||*=|||||||||||||||
targets:19   AUAACCAUUGACUAAUAAAAAAAA   42

2.0 TSA: Zea mays contig08831, mRNA sequence NA coding protein psRNATarget
EU963156.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  ||=|||||*||||*||||||||
targets:489   AUUCAGCGUCUAAAAAAAAAAA   510

2.5 Zea mays clone 258396 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
LQ235503.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |*|||||*|||||||||||=||
targets:45   ACCCAGCUACUAAUAAAAAGAA   66

2.5 Sequence 1498 from Patent EP2985353 NA coding protein psRNATarget
JB163834.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |*|||||*|||||||||||=||
targets:45   ACCCAGCUACUAAUAAAAAGAA   66

2.5 Sequence 1498 from Patent EP2559767 NA coding protein psRNATarget
HI403373.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  |*|||||*|||||||||||=||
targets:45   ACCCAGCUACUAAUAAAAAGAA   66

2.5 Sequence 1498 from Patent EP2074227 NA coding protein psRNATarget
EU959113.1
ncRNA:22   UAGGUCGCUGAUUAUUUUUUUU   1
  *||||*|||||||*||||||||
targets:740   CUCCACCGACUAAAAAAAAAAA   761

2.5 Zea mays clone 210450 glycine-rich RNA-binding protein 2 mRNA, complete cds NA coding protein psRNATarget
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