Search result

BaseInfo

ncRNA ID novel_zma_miR366
Species Zea mays
Class miRNA
Genome position Chr6:156267565-156267652 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2089700;SRR2089701;SRR2089704;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - UCAUGUGGAUUGAAUGAGAUUGGA - 24
Stem-loop(if miRNA) --            A          -------A   AAAUAGGAAAU
  UCAUGUGGAUUG AUGAGAUUGG        AAA           U
  |||||||||||| ||||||||||        |||           U
  GGUACACCUAAC UACUCUAACU        GAG           U
UA            C          CAAAUUUA   AUCGUUCAGUU
Stem-loop sequence UCAUGUGGAUUGAAUGAGAUUGGAAAAAAAUAGGAAAUUUUUUGACUUGCUAGAGAUUUAAACUCAAUCUCAUCCAAUCCACAUGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235173.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||||||||||||||||
targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123

0.0 Sequence 1168 from Patent EP2985353 NA coding protein psRNATarget
JB163504.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||||||||||||||||
targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123

0.0 Sequence 1168 from Patent EP2559767 NA coding protein psRNATarget
HI403043.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||||||||||||||||
targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123

0.0 Sequence 1168 from Patent EP2074227 NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:2350   UCCAAUCUCACUCAAUCCACAUGG   2373

2.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:2290   UCCAAUCUCACUCAAUCCACAUGG   2313

2.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:2283   UCCAAUCUCACUCAAUCCACAUGG   2306

2.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:2155   UCCAAUCUCACUCAAUCCACAUGG   2178

2.0 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:2154   UCCAAUCUCACUCAAUCCACAUGG   2177

2.0 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:2082   UCCAAUCUCACUCAAUCCACAUGG   2105

2.0 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
BT062183.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:248   UCCAAUCUCACUCAAUCCACAUGG   271

2.0 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
BT086633.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:457   UCCAAUCUCACUCAAUCCACAUGG   480

2.0 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
HI409644.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||||||*|||||||||||=
targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120

2.5 Sequence 7769 from Patent EP2074227 NA coding protein psRNATarget
JB170105.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||||||*|||||||||||=
targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120

2.5 Sequence 7769 from Patent EP2559767 NA coding protein psRNATarget
LQ241774.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||||||*|||||||||||=
targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120

2.5 Sequence 7769 from Patent EP2985353 NA coding protein psRNATarget
JB166339.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

2.0 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
LQ238008.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

2.0 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
HI405878.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

2.0 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
LQ238007.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

2.0 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
HI405877.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

2.0 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
JB166338.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

2.0 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
JB166354.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

2.0 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

2.0 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
HI405893.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

2.0 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
EZ092645.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||||||||||*||||||||||||=
targets:18   UCCAAUCUCACUCAAUCCACAUGG   41

2.0 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||=|||||||*||||||||||||=
targets:3440   UCUAAUCUCACUCAAUCCACAUGG   3463

2.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||=|||||||*||||||||||||=
targets:3409   UCUAAUCUCACUCAAUCCACAUGG   3432

2.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||=|||||||*||||||||||||=
targets:3396   UCUAAUCUCACUCAAUCCACAUGG   3419

2.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
EU973712.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||=||||||||*|||||||||||=
targets:1286   UCUAAUCUCAUCCAAUCCACAUGG   1309

2.5 Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds NA coding protein psRNATarget
NM_001158639.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||=||||||||*|||||||||||=
targets:1286   UCUAAUCUCAUCCAAUCCACAUGG   1309

2.5 Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA NA coding protein psRNATarget
BT083591.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||=||||||||*|||||||||||=
targets:1182   UCUAAUCUCAUCCAAUCCACAUGG   1205

2.5 Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds NA coding protein psRNATarget
BT041309.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  ||=||||||||*|||||||||||=
targets:180   UCUAAUCUCAUCCAAUCCACAUGG   203

2.5 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
NM_001154922.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  *|=|||||==|||||||||||||=
targets:669   CCUAAUCUUGUUCAAUCCACAUGG   692

3.0 Zea mays AGP16 (LOC100282009), mRNA NA coding protein psRNATarget
BT035019.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  *|=|||||==|||||||||||||=
targets:647   CCUAAUCUUGUUCAAUCCACAUGG   670

3.0 Zea mays full-length cDNA clone ZM_BFb0032E03 mRNA, complete cds NA coding protein psRNATarget
AY111818.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  *|=|||||==|||||||||||||=
targets:654   CCUAAUCUUGUUCAAUCCACAUGG   677

3.0 Zea mays CL6775_1 mRNA sequence NA coding protein psRNATarget
XM_008674543.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*|||*||||||||||||
targets:2499   UCCAAUCCCAUCCAAUCCACAUGA   2522

2.5 PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA NA coding protein psRNATarget
EZ064016.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*|||||||||||||
targets:122   UCCAAUCCCACUCAAUCCACAUGA   145

2.0 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  *=||||||||*||||||||||||=
targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468

2.0 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
BT061560.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  *=||||||||*||||||||||||=
targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468

2.0 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:5806   UCCAAUCCCACUCAAUCCACAUGG   5829

3.0 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:1231   UCCAAUCCCACUCAAUCCACAUGG   1254

3.0 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224

3.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224

3.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:1083   UCCAAUCCCACUCAAUCCACAUGG   1106

3.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983

3.0 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983

3.0 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:2502   UCCAAUCCCACUCAAUCCACAUGG   2525

3.0 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:2213   UCCAAUCCCACUCAAUCCACAUGG   2236

3.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840

3.0 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840

3.0 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555

3.0 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555

3.0 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:530   UCCAAUCCCACUCAAUCCACAUGG   553

3.0 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT085319.2
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:178   UCCAAUCCCACUCAAUCCACAUGG   201

3.0 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:876   UCCAAUCCCACUCAAUCCACAUGG   899

3.0 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:747   UCCAAUCCCACUCAAUCCACAUGG   770

3.0 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
JB163551.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

3.0 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

3.0 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163555.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

3.0 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
HI403090.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

3.0 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
HI403094.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

3.0 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

3.0 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

3.0 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

3.0 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
HI405841.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

3.0 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
HI405902.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

3.0 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
JB166363.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

3.0 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

3.0 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

3.0 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

3.0 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |||||||*||*||||||||||||=
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

3.0 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
BT066987.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |=|||||*||*||||||||||||=
targets:1417   UUCAAUCCCACUCAAUCCACAUGG   1440

3.0 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   AGGUUAGAGUAAGUUAGGUGUACU   1
  |=|||||*||*||||||||||||=
targets:1126   UUCAAUCCCACUCAAUCCACAUGG   1149

3.0 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.