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BaseInfo

ncRNA ID	novel_zma_miR364
Species	Zea mays
Class	miRNA
Genome position	Chr6:151566022-151566128 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	84 - AACUGAAAUGGAAUAAAGUGGAGG - 107
Stem-loop(if miRNA)	--                     C C       C      UA          C   UCCAUUUUAUUCCAUUUUAGU C UAAAUUA UAAAUA  GAAACUAAAA U   ||||||||||||||||||||| | ||||||| ||||||  |||||||||| C   AGGUGAAAUAAGGUAAAGUCA G AUUUAAU AUUUAU  CUUUGAUUUU U GG                     A U       A      UC          A
Stem-loop sequence	UCCAUUUUAUUCCAUUUUAGUCCCUAAAUUACUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCCUUAUUUAAUAAUUUAUGAACUGAAAUGGAAUAAAGUGGAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU967664.1	ncRNA:24   GGAGGUGAAAUAAGGUAAAGUCAA   1   =||||||||||||||||||=|||| targets:1130   UCUCCACUUUAUUCCAUUUUAGUU   1153 Target Full Sequence	1.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   GGAGGUGAAAUAAGGUAAAGUCAA   1   =||||||||||||||||||=|||| targets:1130   UCUCCACUUUAUUCCAUUUUAGUU   1153 Target Full Sequence	1.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   GGAGGUGAAAUAAGGUAAAGUCAA   1   |||=||=||||||||||||=|||| targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56 Target Full Sequence	2.5	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   GGAGGUGAAAUAAGGUAAAGUCAA   1   |||=||=||||||||||||=|||| targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56 Target Full Sequence	2.5	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   GGAGGUGAAAUAAGGUAAAGUCAA   1   |||=||=||||||||||||=|||| targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56 Target Full Sequence	2.5	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235579.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||||||||||||=|||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1574 from Patent EP2985353	NA	coding protein	psRNATarget
JB163797.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||||||||||||=|||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1461 from Patent EP2559767	NA	coding protein	psRNATarget
HI403449.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||||||||||||=|||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1574 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235466.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||||||||||||=|||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1461 from Patent EP2985353	NA	coding protein	psRNATarget
JB163910.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||||||||||||=|||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1574 from Patent EP2559767	NA	coding protein	psRNATarget
JB163729.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||||||||||||=|||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1393 from Patent EP2559767	NA	coding protein	psRNATarget
HI403268.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||||||||||||=|||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1393 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235398.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||||||||||||=|||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1393 from Patent EP2985353	NA	coding protein	psRNATarget
HI403336.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||||||||||||=|||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1461 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   GGAGGUGAAAUAAGGUAAAGUCAA   1   |||*||=||||||||||||=|||| targets:1003   CCUACAUUUUAUUCCAUUUUAGUU   1026 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   GGAGGUGAAAUAAGGUAAAGUCAA   1   |||*||=||||||||||||=|||| targets:583   CCUACAUUUUAUUCCAUUUUAGUU   606 Target Full Sequence	2.5	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163859.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   ||=||||||||||||||=|||| targets:1   UCUACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1523 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235528.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   ||=||||||||||||||=|||| targets:1   UCUACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1523 from Patent EP2985353	NA	coding protein	psRNATarget
HI403398.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   ||=||||||||||||||=|||| targets:1   UCUACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	1.5	Sequence 1523 from Patent EP2074227	NA	coding protein	psRNATarget
JB163861.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   ||||||||*||||||||=|||| targets:1   UCCACUUUUUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1525 from Patent EP2559767	NA	coding protein	psRNATarget
JB163799.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||*|||||||||=|||| targets:1   UCCACUUAAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1463 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235530.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   ||||||||*||||||||=|||| targets:1   UCCACUUUUUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1525 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235468.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||*|||||||||=|||| targets:1   UCCACUUAAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1463 from Patent EP2985353	NA	coding protein	psRNATarget
HI403338.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   |||||||*|||||||||=|||| targets:1   UCCACUUAAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1463 from Patent EP2074227	NA	coding protein	psRNATarget
HI403400.1	ncRNA:22   AGGUGAAAUAAGGUAAAGUCAA   1   ||||||||*||||||||=|||| targets:1   UCCACUUUUUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1525 from Patent EP2074227	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:24   GGAGGUGAAAUAAGGUAAAGUCAA   1   |||**|=||||||||||||=|||| targets:783   CCUAGAUUUUAUUCCAUUUUAGUU   806 Target Full Sequence	2.5	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget