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BaseInfo

ncRNA ID	novel_zma_miR360
Species	Zea mays
Class	miRNA
Genome position	Chr6:135611924-135612009 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	1 - AUGUAUUGAAGUGGAUUGGGGUGU - 24
Stem-loop(if miRNA)	--    A    A                 C  AACUAAUUUAC   AUGU UUGA GUGGAUUGGGGUGUAAA UA           A   |||| |||| ||||||||||||||||| ||   UACA AACU CACCUAACCCCAUAUUU AU           C UG    C    C                 A  CCACCUAACAU
Stem-loop sequence	AUGUAUUGAAGUGGAUUGGGGUGUAAACUAAACUAAUUUACACUACAAUCCACCUAAUUUAUACCCCAAUCCACCUCAACACAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235450.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||||||||||||||||||||| targets:62   ACACCCCAAUCCACUUCAAUACAU   85 Target Full Sequence	0.0	Sequence 1445 from Patent EP2985353	NA	coding protein	psRNATarget
JB163782.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||||||||||||||||||||| targets:62   ACACCCCAAUCCACUUCAAUACAU   85 Target Full Sequence	0.0	Sequence 1446 from Patent EP2559767	NA	coding protein	psRNATarget
JB163781.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||||||||||||||||||||| targets:62   ACACCCCAAUCCACUUCAAUACAU   85 Target Full Sequence	0.0	Sequence 1445 from Patent EP2559767	NA	coding protein	psRNATarget
HI403321.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||||||||||||||||||||| targets:62   ACACCCCAAUCCACUUCAAUACAU   85 Target Full Sequence	0.0	Sequence 1446 from Patent EP2074227	NA	coding protein	psRNATarget
HI403320.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||||||||||||||||||||| targets:62   ACACCCCAAUCCACUUCAAUACAU   85 Target Full Sequence	0.0	Sequence 1445 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235451.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||||||||||||||||||||| targets:62   ACACCCCAAUCCACUUCAAUACAU   85 Target Full Sequence	0.0	Sequence 1446 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235163.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||=|||||||||||||||||| targets:62   ACACCUCAAUCCACUUCAAUACAU   85 Target Full Sequence	1.0	Sequence 1158 from Patent EP2985353	NA	coding protein	psRNATarget
HI403033.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||=|||||||||||||||||| targets:62   ACACCUCAAUCCACUUCAAUACAU   85 Target Full Sequence	1.0	Sequence 1158 from Patent EP2074227	NA	coding protein	psRNATarget
JB163494.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||=|||||||||||||||||| targets:62   ACACCUCAAUCCACUUCAAUACAU   85 Target Full Sequence	1.0	Sequence 1158 from Patent EP2559767	NA	coding protein	psRNATarget
HI403376.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||||||||||*||||||||| targets:62   ACACCCCAAUCCACAUCAAUACAU   85 Target Full Sequence	1.5	Sequence 1501 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235506.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||||||||||*||||||||| targets:62   ACACCCCAAUCCACAUCAAUACAU   85 Target Full Sequence	1.5	Sequence 1501 from Patent EP2985353	NA	coding protein	psRNATarget
JB163837.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||||||||||*||||||||| targets:62   ACACCCCAAUCCACAUCAAUACAU   85 Target Full Sequence	1.5	Sequence 1501 from Patent EP2559767	NA	coding protein	psRNATarget
JB163527.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||||||||||*||||||||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	1.5	Sequence 1191 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235196.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||||||||||*||||||||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	1.5	Sequence 1191 from Patent EP2985353	NA	coding protein	psRNATarget
HI403075.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||||||||||*||||||||| targets:61   ACACCCCAAUCCACAUCAAUACAU   84 Target Full Sequence	1.5	Sequence 1200 from Patent EP2074227	NA	coding protein	psRNATarget
HI403066.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||||||||||*||||||||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	1.5	Sequence 1191 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235205.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||||||||||*||||||||| targets:61   ACACCCCAAUCCACAUCAAUACAU   84 Target Full Sequence	1.5	Sequence 1200 from Patent EP2985353	NA	coding protein	psRNATarget
JB163536.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||||||||||*||||||||| targets:61   ACACCCCAAUCCACAUCAAUACAU   84 Target Full Sequence	1.5	Sequence 1200 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001156128.2	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||=||||||||*||||||||| targets:883   ACACCUCAAUCCACCUCAAUACAU   906 Target Full Sequence	2.5	Zea mays protein SFT2 (LOC100283226), mRNA	NA	coding protein	psRNATarget
BT085755.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||=||||||||*||||||||| targets:883   ACACCUCAAUCCACCUCAAUACAU   906 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds	NA	coding protein	psRNATarget
EZ052294.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||=||||||*|||||||||||| targets:57   ACACUCCAAUCAACUUCAAUACAU   80 Target Full Sequence	1.5	TSA: Zea mays contig53415, mRNA sequence	NA	coding protein	psRNATarget
EU941642.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |||||=||||||||*||||||||| targets:10   ACACCUCAAUCCACCUCAAUACAU   33 Target Full Sequence	2.5	Zea mays clone 1468727 mRNA sequence	NA	coding protein	psRNATarget
EZ069719.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||=|||||||*||||||||| targets:53   ACACCCUAAUCCACCUCAAUACAU   76 Target Full Sequence	2.5	TSA: Zea mays contig05355, mRNA sequence	NA	coding protein	psRNATarget
HI402950.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||=|||||||*||||||||| targets:60   ACACCCUAAUCCACCUCAAUACAU   83 Target Full Sequence	2.5	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
JB163411.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||=|||||||*||||||||| targets:60   ACACCCUAAUCCACCUCAAUACAU   83 Target Full Sequence	2.5	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||||=|||||||*||||||||| targets:60   ACACCCUAAUCCACCUCAAUACAU   83 Target Full Sequence	2.5	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
AY103802.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||=|=||||*|||||||||||| targets:784   ACACUCUAAUCAACUUCAAUACAU   807 Target Full Sequence	2.5	Zea mays PCO148457 mRNA sequence	NA	coding protein	psRNATarget
LQ235622.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||=|=|||||||*||||||||| targets:76   ACACUCUAAUCCACCUCAAUACAU   99 Target Full Sequence	2.5	Sequence 1617 from Patent EP2985353	NA	coding protein	psRNATarget
HI403492.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||=|=|||||||*||||||||| targets:76   ACACUCUAAUCCACCUCAAUACAU   99 Target Full Sequence	2.5	Sequence 1617 from Patent EP2074227	NA	coding protein	psRNATarget
JB163953.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   ||||=|=|||||||*||||||||| targets:76   ACACUCUAAUCCACCUCAAUACAU   99 Target Full Sequence	2.5	Sequence 1617 from Patent EP2559767	NA	coding protein	psRNATarget
AY112376.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   *||==|||||||||||||||*||| targets:387   CCAUUCCAAUCCACUUCAAUCCAU   410 Target Full Sequence	1.5	Zea mays CL41055_1 mRNA sequence	NA	coding protein	psRNATarget
EU963895.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   **|=||||||||||*||||||||| targets:980   UGAUCCCAAUCCACCUCAAUACAU   1003 Target Full Sequence	1.5	Zea mays clone 273839 protein SFT2 mRNA, complete cds	NA	coding protein	psRNATarget
JB167199.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   **|=||||||||||*||||||||| targets:64   UGAUCCCAAUCCACCUCAAUACAU   87 Target Full Sequence	1.5	Sequence 4863 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238868.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   **|=||||||||||*||||||||| targets:64   UGAUCCCAAUCCACCUCAAUACAU   87 Target Full Sequence	1.5	Sequence 4863 from Patent EP2985353	NA	coding protein	psRNATarget
HI406738.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   **|=||||||||||*||||||||| targets:64   UGAUCCCAAUCCACCUCAAUACAU   87 Target Full Sequence	1.5	Sequence 4863 from Patent EP2074227	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |*|==|||||||||*||||||||| targets:1191   AAAUUCCAAUCCACCUCAAUACAU   1214 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
EZ067729.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |=|*||=||||||||||*|||||| targets:34   AUAACCUAAUCCACUUCCAUACAU   57 Target Full Sequence	2.5	TSA: Zea mays contig03364, mRNA sequence	NA	coding protein	psRNATarget
JB163398.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |=||*=|||||||||||||*|||| targets:61   AUACAUCAAUCCACUUCAACACAU   84 Target Full Sequence	2.5	Sequence 1062 from Patent EP2559767	NA	coding protein	psRNATarget
HI402937.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |=||*=|||||||||||||*|||| targets:61   AUACAUCAAUCCACUUCAACACAU   84 Target Full Sequence	2.5	Sequence 1062 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235067.1	ncRNA:24   UGUGGGGUUAGGUGAAGUUAUGUA   1   |=||*=|||||||||||||*|||| targets:61   AUACAUCAAUCCACUUCAACACAU   84 Target Full Sequence	2.5	Sequence 1062 from Patent EP2985353	NA	coding protein	psRNATarget