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BaseInfo

ncRNA ID	osa-miR5149
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:29756516-29756891 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	13 - GAGGAGCUGUGACGAUUUGGGA - 34
Stem-loop(if miRNA)	----   A              CA   A        AA   C                    -  C      A              ----------UU      UUUCCUUUUCCUUUUUUUUCUUUUCUUCUUCUCUUUUUUUUUCUUUUAUUCUCUUCUCUUUUCUCUGUGACCUGAGCAACCCGUGUAGC     CAU UAGGUCCCAAAUCG  ACA CUCCUCCA  AUC UACGUGGCGCUGAUGUGGCG UG CACACG ACGUGACGUGGCAU            AAAAAU                                                                                         G     ||| ||||||||||||||  ||| ||||||||  ||| |||||||||||||||||||| || |||||| ||||||||||||||            ||||||                                                                                         G     GUA AUCCAGGGUUUAGC  UGU GAGGAGGU  UAG AUGUACCGUGACUACACCGU AC GUGUGU UGUACUGUACCGUA            GUUUAC                                                                                         U CACA   C              AG   C        CC   A                    U  U      C              UUAUAACUUACU      UCUGGGUGAAUUUUUUAAAAGUAAAGGGAAAAAAUAAGAGAAAAAAAAGGAAAGAAGAGGAAAAGAACGAGAGUGACGUCGAUAUCCGG
Stem-loop sequence	CAUAUAGGUCCCAAAUCGCAACAACUCCUCCAAAAUCCUACGUGGCGCUGAUGUGGCGUGCCACACGAACGUGACGUGGCAUUUAAAAAUUUUCCUUUUCCUUUUUUUUCUUUUCUUCUUCUCUUUUUUUUUCUUUUAUUCUCUUCUCUUUUCUCUGUGACCUGAGCAACCCGUGUAGCGGUGGCCUAUAGCUGCAGUGAGAGCAAGAAAAGGAGAAGAAAGGAAAAAAAAGAGAAUAAAAAAGGGAAAUGAAAAUUUUUUAAGUGGGUCUCAUUUGUCAUUCAAUAUUAUGCCAUGUCAUGUCUGUGUGUCAUUGCCACAUCAGUGCCAUGUAAGAUCCUGGAGGAGCUGUGACGAUUUGGGACCUACAUGACAC

Reference

1	PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011).