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BaseInfo

ncRNA ID	novel_zma_miR357
Species	Zea mays
Class	miRNA
Genome position	Chr10:106183458-106183592 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	1 - AAAGAGCUCUUUGCCAAGUGUUGU - 24
Stem-loop(if miRNA)	--               A      G     G        A        -CC              AAA   AAAGAGCUCUUUGCC AGUGUU UAUUU UGACACUC GCAAAGAG   CUUUGCCGAGUGUC   A   ||||||||||||||| |||||| ||||| |||||||| ||||||||   ||||||||||||||   UUUUUCGAGAAACGG UCACAA AUAAA ACUGUGAG CGUUUCUC   GAAACGGCUCACAG   A GC               C      A     A        C        AAA              AAA
Stem-loop sequence	AAAGAGCUCUUUGCCAAGUGUUGUAUUUGUGACACUCAGCAAAGAGCCCUUUGCCGAGUGUCAAAAAAAAGACACUCGGCAAAGAAACUCUUUGCCGAGUGUCAAAAAUAAAACACUCGGCAAAGAGCUUUUUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406693.1	ncRNA:24   UGUUGUGAACCGUUUCUCGAGAAA   1   |=||||||*||||||||||||||| targets:90   AUAACACUCGGCAAAGAGCUCUUU   113 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UGUUGUGAACCGUUUCUCGAGAAA   1   *==|||||*||||||||||||||| targets:50   UUGACACUCGGCAAAGAGCUCUUU   73 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UGUUGUGAACCGUUUCUCGAGAAA   1   |=||||||*||||||||||||||| targets:90   AUAACACUCGGCAAAGAGCUCUUU   113 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UGUUGUGAACCGUUUCUCGAGAAA   1   *==|||||*||||||||||||||| targets:50   UUGACACUCGGCAAAGAGCUCUUU   73 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UGUUGUGAACCGUUUCUCGAGAAA   1   |=||||||*||||||||||||||| targets:90   AUAACACUCGGCAAAGAGCUCUUU   113 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UGUUGUGAACCGUUUCUCGAGAAA   1   *==|||||*||||||||||||||| targets:50   UUGACACUCGGCAAAGAGCUCUUU   73 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UGUUGUGAACCGUUUCUCGAGAAA   1   |*||||||*||||||||||||||| targets:1970   AAAACACUCGGCAAAGAGCUCUUU   1993 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UGUUGUGAACCGUUUCUCGAGAAA   1   |*||||||*||||||||||||||| targets:1970   AAAACACUCGGCAAAGAGCUCUUU   1993 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543430.1	ncRNA:24   UGUUGUGAACCGUUUCUCGAGAAA   1   ====||||*||||||||||||||| targets:1159   GUGGCACUCGGCAAAGAGCUCUUU   1182 Target Full Sequence	1.0	PREDICTED: Zea mays protein enabled homolog (LOC103636633), mRNA	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   UGUUGUGAACCGUUUCUCGAGAAA   1   *=|=||||*||||||||*|||||| targets:1124   UUAGCACUCGGCAAAGAACUCUUU   1147 Target Full Sequence	2.5	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget