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BaseInfo

ncRNA ID novel_zma_miR353
Species Zea mays
Class miRNA
Genome position Chr5:107310801-107310863 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287160;SRR1997865;SRR5451003;SRR5451004;SRR5451005;SRR5451006;SRR2089704;SRR2089707
Length 24
Mature sequence(if miRNA) 1 - GAAAACCGCCUGUAGAAAUGGCCU - 24
Stem-loop(if miRNA) --  A       U         G   -    A
  GA AACCGCC GUAGAAAUG CCU CCAC G
  || ||||||| ||||||||| ||| |||| U
  CU UUGGCGG CAUCUUUAC GGA GGUG A
AG  C       U         -   A    U
Stem-loop sequence GAAAACCGCCUGUAGAAAUGGCCUCCACAGUAUGUGGAAGGCAUUUCUACUGGCGGUUCUCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU943186.1
ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1
  **||=|||||||||||||||||*=
targets:1918   UUGCUAUUUCUACAGGCGGUUUCU   1941

2.5 Zea mays clone 1582065 mRNA sequence NA coding protein psRNATarget
LQ235215.1
ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1
  *||--||||=||||||||||||||
targets:35   UGG--AUUUUUACAGGCGGUUUUC   56

1.0 Sequence 1210 from Patent EP2985353 NA coding protein psRNATarget
JB163546.1
ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1
  *||--||||=||||||||||||||
targets:35   UGG--AUUUUUACAGGCGGUUUUC   56

1.0 Sequence 1210 from Patent EP2559767 NA coding protein psRNATarget
HI403085.1
ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1
  *||--||||=||||||||||||||
targets:35   UGG--AUUUUUACAGGCGGUUUUC   56

1.0 Sequence 1210 from Patent EP2074227 NA coding protein psRNATarget
JB163520.1
ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1
  *||--||||=|||||*||||||||
targets:76   UGG--AUUUUUACAGACGGUUUUC   97

2.5 Sequence 1184 from Patent EP2559767 NA coding protein psRNATarget
LQ235189.1
ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1
  *||--||||=|||||*||||||||
targets:76   UGG--AUUUUUACAGACGGUUUUC   97

2.5 Sequence 1184 from Patent EP2985353 NA coding protein psRNATarget
HI403059.1
ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1
  *||--||||=|||||*||||||||
targets:76   UGG--AUUUUUACAGACGGUUUUC   97

2.5 Sequence 1184 from Patent EP2074227 NA coding protein psRNATarget
EU944427.1
ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1
  |**=*||||||||*|||||||||=
targets:589   AAUUGAUUUCUACUGGCGGUUUUU   612

2.5 Zea mays clone 218366 mRNA sequence NA coding protein psRNATarget