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BaseInfo

ncRNA ID novel_zma_miR348
Species Zea mays
Class miRNA
Genome position Chr5:91982333-91982396 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089712
Length 22
Mature sequence(if miRNA) 1 - GUUUUUUUAUUUGUCGCUGGAU - 22
Stem-loop(if miRNA) ----G                           A
     UUUUUUUAUUUGUCGCUGGAUAGUGUA A
     |||||||||||||||||||||||||||
     AGAAAAAUAAACAGCGACCUAUCACGU A
GGCAA                           U
Stem-loop sequence GUUUUUUUAUUUGUCGCUGGAUAGUGUAAAAUUGCACUAUCCAGCGACAAAUAAAAAGAAACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008669416.2
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||=||||||||||||
targets:539   AUCCAGCGAUAAAUAAAAAAAC   560

1.5 PREDICTED: Zea mays hypothetical protein (LOC100275307), transcript variant X1, mRNA NA coding protein psRNATarget
HI410015.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:54   AUCCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 8140 from Patent EP2074227 NA coding protein psRNATarget
LQ242145.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:54   AUCCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 8140 from Patent EP2985353 NA coding protein psRNATarget
JB170476.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:54   AUCCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 8140 from Patent EP2559767 NA coding protein psRNATarget
LQ240748.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:54   AUCCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 6743 from Patent EP2985353 NA coding protein psRNATarget
JB169079.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:54   AUCCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 6743 from Patent EP2559767 NA coding protein psRNATarget
HI408618.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:54   AUCCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 6743 from Patent EP2074227 NA coding protein psRNATarget
LQ235424.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||=|||||||||||||||||*
targets:61   AUCUAGCGACAAAUAAAAAAAA   82

2.0 Sequence 1419 from Patent EP2985353 NA coding protein psRNATarget
HI403294.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||=|||||||||||||||||*
targets:61   AUCUAGCGACAAAUAAAAAAAA   82

2.0 Sequence 1419 from Patent EP2074227 NA coding protein psRNATarget
JB163755.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||=|||||||||||||||||*
targets:61   AUCUAGCGACAAAUAAAAAAAA   82

2.0 Sequence 1419 from Patent EP2559767 NA coding protein psRNATarget
LQ235531.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:61   AUCCAGCGACAAAUAAAAAGAA   82

2.5 Sequence 1526 from Patent EP2985353 NA coding protein psRNATarget
LQ235409.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:61   AUCCAGCGACAAAUAAAAAGAA   82

2.5 Sequence 1404 from Patent EP2985353 NA coding protein psRNATarget
HI403401.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:61   AUCCAGCGACAAAUAAAAAGAA   82

2.5 Sequence 1526 from Patent EP2074227 NA coding protein psRNATarget
JB163740.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:61   AUCCAGCGACAAAUAAAAAGAA   82

2.5 Sequence 1404 from Patent EP2559767 NA coding protein psRNATarget
HI403279.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:61   AUCCAGCGACAAAUAAAAAGAA   82

2.5 Sequence 1404 from Patent EP2074227 NA coding protein psRNATarget
JB163862.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:61   AUCCAGCGACAAAUAAAAAGAA   82

2.5 Sequence 1526 from Patent EP2559767 NA coding protein psRNATarget
EZ061437.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:218   AUCCAGCGACAAAUAAAAAGAA   239

2.5 TSA: Zea mays contig62559, mRNA sequence NA coding protein psRNATarget
BT060817.2
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:280   AUCCAGCGACAAAUAAAAAGAA   301

2.5 Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds NA coding protein psRNATarget
XM_008671993.2
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:1216   AUCCAGCGACAAAUAAAAAGAA   1237

2.5 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA NA coding protein psRNATarget
EU965844.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:1338   AUCCAGCGACAAAUAAAAAGAA   1359

2.5 Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds NA coding protein psRNATarget
NM_001156655.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:1338   AUCCAGCGACAAAUAAAAAGAA   1359

2.5 Zea mays wax synthase (LOC100283756), mRNA NA coding protein psRNATarget
XM_008647346.2
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:191   AUCCAGCGACAAAUAAAAAGAA   212

2.5 PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA NA coding protein psRNATarget
XM_008651544.2
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:1405   AUCCAGCGACAAAUAAAAAGAA   1426

2.5 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008671992.2
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:1322   AUCCAGCGACAAAUAAAAAGAA   1343

2.5 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008677073.2
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:1577   AUCCAGCGACAAAUAAAAAGAA   1598

2.5 PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA NA coding protein psRNATarget
NM_001148943.2
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:1593   AUCCAGCGACAAAUAAAAAGAA   1614

2.5 Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA NA coding protein psRNATarget
EU957018.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:2050   AUCCAGCGACAAAUAAAAAGAA   2071

2.5 Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds NA coding protein psRNATarget
XM_008651543.2
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:2546   AUCCAGCGACAAAUAAAAAGAA   2567

2.5 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546615.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:2846   AUCCAGCGACAAAUAAAAAGAA   2867

2.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546614.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:2863   AUCCAGCGACAAAUAAAAAGAA   2884

2.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546612.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:2969   AUCCAGCGACAAAUAAAAAGAA   2990

2.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546613.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||||||||||||||=|*
targets:3748   AUCCAGCGACAAAUAAAAAGAA   3769

2.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA NA coding protein psRNATarget
HI407269.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||||*|||||||||
targets:56   AUCCAGCGACAACUAAAAAAAC   77

1.5 Sequence 5394 from Patent EP2074227 NA coding protein psRNATarget
LQ239399.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||||*|||||||||
targets:56   AUCCAGCGACAACUAAAAAAAC   77

1.5 Sequence 5394 from Patent EP2985353 NA coding protein psRNATarget
JB167730.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||||*|||||||||
targets:56   AUCCAGCGACAACUAAAAAAAC   77

1.5 Sequence 5394 from Patent EP2559767 NA coding protein psRNATarget
XM_020549872.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||||*|||||||||
targets:1315   AUCCAGCGACAACUAAAAAAAC   1336

1.5 PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA NA coding protein psRNATarget
BT065656.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||||*|||||||||
targets:1482   AUCCAGCGACAACUAAAAAAAC   1503

1.5 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds NA coding protein psRNATarget
NM_001175582.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||||*|||||||||
targets:1482   AUCCAGCGACAACUAAAAAAAC   1503

1.5 Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA NA coding protein psRNATarget
LQ241745.1
ncRNA:22   UAGGUCGCUGUUUAUUUU-UUUG   1
  ||=|||||||||||||||-||||
targets:54   AUUCAGCGACAAAUAAAAGAAAC   76

3.0 Sequence 7740 from Patent EP2985353 NA coding protein psRNATarget
JB170076.1
ncRNA:22   UAGGUCGCUGUUUAUUUU-UUUG   1
  ||=|||||||||||||||-||||
targets:54   AUUCAGCGACAAAUAAAAGAAAC   76

3.0 Sequence 7740 from Patent EP2559767 NA coding protein psRNATarget
HI409615.1
ncRNA:22   UAGGUCGCUGUUUAUUUU-UUUG   1
  ||=|||||||||||||||-||||
targets:54   AUUCAGCGACAAAUAAAAGAAAC   76

3.0 Sequence 7740 from Patent EP2074227 NA coding protein psRNATarget
HI409961.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||=||||||||||||||||=|*
targets:54   AUUCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 8086 from Patent EP2074227 NA coding protein psRNATarget
LQ241075.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||=||||||||||||||||=|*
targets:54   AUUCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 7070 from Patent EP2985353 NA coding protein psRNATarget
LQ242091.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||=||||||||||||||||=|*
targets:54   AUUCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 8086 from Patent EP2985353 NA coding protein psRNATarget
HI408945.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||=||||||||||||||||=|*
targets:54   AUUCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 7070 from Patent EP2074227 NA coding protein psRNATarget
JB170422.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||=||||||||||||||||=|*
targets:54   AUUCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 8086 from Patent EP2559767 NA coding protein psRNATarget
JB169406.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||=||||||||||||||||=|*
targets:54   AUUCAGCGACAAAUAAAAAGAA   75

2.5 Sequence 7070 from Patent EP2559767 NA coding protein psRNATarget
EU964901.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||=||||||||||||||||=|*
targets:547   AUUCAGCGACAAAUAAAAAGAA   568

2.5 Zea mays clone 282450 mRNA sequence NA coding protein psRNATarget
NM_001151882.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||=||||||||||||||||=|*
targets:619   AUUCAGCGACAAAUAAAAAGAA   640

2.5 Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA NA coding protein psRNATarget
EU974849.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||=||||||||||||||||=|*
targets:619   AUUCAGCGACAAAUAAAAAGAA   640

2.5 Zea mays clone 459794 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
LQ240700.1
ncRNA:22   UAGGUCGCUGUUUAUUUUU-UUG   1
  ||*||||||||||||||||-|||
targets:54   AUNCAGCGACAAAUAAAAAGAAC   76

3.0 Sequence 6695 from Patent EP2985353 NA coding protein psRNATarget
JB169031.1
ncRNA:22   UAGGUCGCUGUUUAUUUUU-UUG   1
  ||*||||||||||||||||-|||
targets:54   AUNCAGCGACAAAUAAAAAGAAC   76

3.0 Sequence 6695 from Patent EP2559767 NA coding protein psRNATarget
HI408570.1
ncRNA:22   UAGGUCGCUGUUUAUUUUU-UUG   1
  ||*||||||||||||||||-|||
targets:54   AUNCAGCGACAAAUAAAAAGAAC   76

3.0 Sequence 6695 from Patent EP2074227 NA coding protein psRNATarget
LQ237958.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||*||||||||||*
targets:50   AUCCAGCGACUAAUAAAAAAAA   71

2.5 Sequence 3953 from Patent EP2985353 NA coding protein psRNATarget
HI405828.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||*||||||||||*
targets:50   AUCCAGCGACUAAUAAAAAAAA   71

2.5 Sequence 3953 from Patent EP2074227 NA coding protein psRNATarget
JB166289.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||*||||||||||*
targets:50   AUCCAGCGACUAAUAAAAAAAA   71

2.5 Sequence 3953 from Patent EP2559767 NA coding protein psRNATarget
HI405860.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||*||||||||||*
targets:55   AUCCAGCGACUAAUAAAAAAAA   76

2.5 Sequence 3985 from Patent EP2074227 NA coding protein psRNATarget
LQ237990.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||*||||||||||*
targets:55   AUCCAGCGACUAAUAAAAAAAA   76

2.5 Sequence 3985 from Patent EP2985353 NA coding protein psRNATarget
JB166321.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||||||||||*||||||||||*
targets:55   AUCCAGCGACUAAUAAAAAAAA   76

2.5 Sequence 3985 from Patent EP2559767 NA coding protein psRNATarget
BT088136.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||*||||||||||||||||=|*
targets:804   AUACAGCGACAAAUAAAAAGAA   825

2.5 Zea mays full-length cDNA clone ZM_BFc0030P23 mRNA, complete cds NA coding protein psRNATarget
NM_001196908.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  ||*||||||||||||||||=|*
targets:804   AUACAGCGACAAAUAAAAAGAA   825

2.5 Zea mays uncharacterized LOC100502430 (LOC100502430), mRNA NA coding protein psRNATarget
EU940721.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  =|||=|||*||||||||||||=
targets:846   GUCCGGCGCCAAAUAAAAAAAU   867

3.0 Zea mays clone 1060969 mRNA sequence NA coding protein psRNATarget
XM_008670817.2
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  =|||=|||*||||||||||||=
targets:2528   GUCCGGCGCCAAAUAAAAAAAU   2549

3.0 PREDICTED: Zea mays trichohyalin (LOC103646089), mRNA NA coding protein psRNATarget
NM_001352327.1
ncRNA:22   UAGGUCGCUGUUUAUUUUUUUG   1
  |||||||*||||*|||||||||
targets:2719   AUCCAGCAACAACUAAAAAAAC   2740

2.5 Zea mays delta-1-pyrroline-5-carboxylate synthase-like (LOC103630430), mRNA NA coding protein psRNATarget
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