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BaseInfo

ncRNA ID	novel_zma_miR340
Species	Zea mays
Class	miRNA
Genome position	Chr5:5815448-5815508 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089707
Length	21
Mature sequence(if miRNA)	41 - UUUUUUUAUUUGUCGCUAGAU - 61
Stem-loop(if miRNA)	---                 A         A    UUUUUUUAUUUGUCGCU GAUAGUGUA U    ||||||||||||||||| |||||||||    AGAAAAAUAAACAGCGA CUAUCACAU U CAA                 C         U
Stem-loop sequence	UUUUUUUAUUUGUCGCUAGAUAGUGUAAUUUUACACUAUCCAGCGACAAAUAAAAAGAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235424.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   ||||||||||||||||||||| targets:61   AUCUAGCGACAAAUAAAAAAA   81 Target Full Sequence	0.0	Sequence 1419 from Patent EP2985353	NA	coding protein	psRNATarget
JB163755.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   ||||||||||||||||||||| targets:61   AUCUAGCGACAAAUAAAAAAA   81 Target Full Sequence	0.0	Sequence 1419 from Patent EP2559767	NA	coding protein	psRNATarget
HI403294.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   ||||||||||||||||||||| targets:61   AUCUAGCGACAAAUAAAAAAA   81 Target Full Sequence	0.0	Sequence 1419 from Patent EP2074227	NA	coding protein	psRNATarget
JB170077.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||||||||||||||||||=| targets:54   AUCUAGCGACAAAUAAAAAGA   74 Target Full Sequence	1.5	Sequence 7741 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241746.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||||||||||||||||||=| targets:54   AUCUAGCGACAAAUAAAAAGA   74 Target Full Sequence	1.5	Sequence 7741 from Patent EP2985353	NA	coding protein	psRNATarget
HI409616.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||||||||||||||||||=| targets:54   AUCUAGCGACAAAUAAAAAGA   74 Target Full Sequence	1.5	Sequence 7741 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020546613.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:3748   AUCCAGCGACAAAUAAAAAGA   3768 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546612.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:2969   AUCCAGCGACAAAUAAAAAGA   2989 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546614.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:2863   AUCCAGCGACAAAUAAAAAGA   2883 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546615.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:2846   AUCCAGCGACAAAUAAAAAGA   2866 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008651543.2	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:2546   AUCCAGCGACAAAUAAAAAGA   2566 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957018.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:2050   AUCCAGCGACAAAUAAAAAGA   2070 Target Full Sequence	2.5	Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148943.2	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:1593   AUCCAGCGACAAAUAAAAAGA   1613 Target Full Sequence	2.5	Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA	NA	coding protein	psRNATarget
XM_008677073.2	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:1577   AUCCAGCGACAAAUAAAAAGA   1597 Target Full Sequence	2.5	PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA	NA	coding protein	psRNATarget
XM_008671992.2	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:1322   AUCCAGCGACAAAUAAAAAGA   1342 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008651544.2	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:1405   AUCCAGCGACAAAUAAAAAGA   1425 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647346.2	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:191   AUCCAGCGACAAAUAAAAAGA   211 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA	NA	coding protein	psRNATarget
EU965844.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:1338   AUCCAGCGACAAAUAAAAAGA   1358 Target Full Sequence	2.5	Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156655.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:1338   AUCCAGCGACAAAUAAAAAGA   1358 Target Full Sequence	2.5	Zea mays wax synthase (LOC100283756), mRNA	NA	coding protein	psRNATarget
XM_008671993.2	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:1216   AUCCAGCGACAAAUAAAAAGA   1236 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT060817.2	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:280   AUCCAGCGACAAAUAAAAAGA   300 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669416.2	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||=||||||||||| targets:539   AUCCAGCGAUAAAUAAAAAAA   559 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100275307), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ061437.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:218   AUCCAGCGACAAAUAAAAAGA   238 Target Full Sequence	2.5	TSA: Zea mays contig62559, mRNA sequence	NA	coding protein	psRNATarget
LQ235531.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:61   AUCCAGCGACAAAUAAAAAGA   81 Target Full Sequence	2.5	Sequence 1526 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235409.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:61   AUCCAGCGACAAAUAAAAAGA   81 Target Full Sequence	2.5	Sequence 1404 from Patent EP2985353	NA	coding protein	psRNATarget
HI403401.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:61   AUCCAGCGACAAAUAAAAAGA   81 Target Full Sequence	2.5	Sequence 1526 from Patent EP2074227	NA	coding protein	psRNATarget
HI403279.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:61   AUCCAGCGACAAAUAAAAAGA   81 Target Full Sequence	2.5	Sequence 1404 from Patent EP2074227	NA	coding protein	psRNATarget
JB163862.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:61   AUCCAGCGACAAAUAAAAAGA   81 Target Full Sequence	2.5	Sequence 1526 from Patent EP2559767	NA	coding protein	psRNATarget
JB163740.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:61   AUCCAGCGACAAAUAAAAAGA   81 Target Full Sequence	2.5	Sequence 1404 from Patent EP2559767	NA	coding protein	psRNATarget
HI410015.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:54   AUCCAGCGACAAAUAAAAAGA   74 Target Full Sequence	2.5	Sequence 8140 from Patent EP2074227	NA	coding protein	psRNATarget
HI408618.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:54   AUCCAGCGACAAAUAAAAAGA   74 Target Full Sequence	2.5	Sequence 6743 from Patent EP2074227	NA	coding protein	psRNATarget
JB169079.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:54   AUCCAGCGACAAAUAAAAAGA   74 Target Full Sequence	2.5	Sequence 6743 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240748.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:54   AUCCAGCGACAAAUAAAAAGA   74 Target Full Sequence	2.5	Sequence 6743 from Patent EP2985353	NA	coding protein	psRNATarget
JB170476.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:54   AUCCAGCGACAAAUAAAAAGA   74 Target Full Sequence	2.5	Sequence 8140 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242145.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*|||||||||||||||=| targets:54   AUCCAGCGACAAAUAAAAAGA   74 Target Full Sequence	2.5	Sequence 8140 from Patent EP2985353	NA	coding protein	psRNATarget
BT024069.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   *||||||*|||||||||||=| targets:1250   CUCUAGCAACAAAUAAAAAGA   1270 Target Full Sequence	2.5	Zea mays clone EL01N0450D06 mRNA sequence	NA	coding protein	psRNATarget
AY105669.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   *||||||*|||||||||||=| targets:12   CUCUAGCAACAAAUAAAAAGA   32 Target Full Sequence	2.5	Zea mays PCO148095 mRNA sequence	NA	coding protein	psRNATarget
XM_020542631.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |**|=|||||||||||||||| targets:3689   ACAUGGCGACAAAUAAAAAAA   3709 Target Full Sequence	2.0	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542629.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |**|=|||||||||||||||| targets:3274   ACAUGGCGACAAAUAAAAAAA   3294 Target Full Sequence	2.0	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542630.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |**|=|||||||||||||||| targets:3274   ACAUGGCGACAAAUAAAAAAA   3294 Target Full Sequence	2.0	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001175582.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||||*|||||||| targets:1482   AUCCAGCGACAACUAAAAAAA   1502 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA	NA	coding protein	psRNATarget
BT065656.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||||*|||||||| targets:1482   AUCCAGCGACAACUAAAAAAA   1502 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549872.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||||*|||||||| targets:1315   AUCCAGCGACAACUAAAAAAA   1335 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU967047.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   ||||||*||||||*||||||| targets:1266   AUCUAGAGACAAAAAAAAAAA   1286 Target Full Sequence	2.5	Zea mays clone 299112 mRNA sequence	NA	coding protein	psRNATarget
JB166321.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||*|||||||||| targets:55   AUCCAGCGACUAAUAAAAAAA   75 Target Full Sequence	2.5	Sequence 3985 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237990.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||*|||||||||| targets:55   AUCCAGCGACUAAUAAAAAAA   75 Target Full Sequence	2.5	Sequence 3985 from Patent EP2985353	NA	coding protein	psRNATarget
HI405860.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||*|||||||||| targets:55   AUCCAGCGACUAAUAAAAAAA   75 Target Full Sequence	2.5	Sequence 3985 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239399.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||||*|||||||| targets:56   AUCCAGCGACAACUAAAAAAA   76 Target Full Sequence	2.5	Sequence 5394 from Patent EP2985353	NA	coding protein	psRNATarget
JB167730.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||||*|||||||| targets:56   AUCCAGCGACAACUAAAAAAA   76 Target Full Sequence	2.5	Sequence 5394 from Patent EP2559767	NA	coding protein	psRNATarget
HI407269.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||||*|||||||| targets:56   AUCCAGCGACAACUAAAAAAA   76 Target Full Sequence	2.5	Sequence 5394 from Patent EP2074227	NA	coding protein	psRNATarget
HI405828.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||*|||||||||| targets:50   AUCCAGCGACUAAUAAAAAAA   70 Target Full Sequence	2.5	Sequence 3953 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237958.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||*|||||||||| targets:50   AUCCAGCGACUAAUAAAAAAA   70 Target Full Sequence	2.5	Sequence 3953 from Patent EP2985353	NA	coding protein	psRNATarget
JB166289.1	ncRNA:21   UAGAUCGCUGUUUAUUUUUUU   1   |||*||||||*|||||||||| targets:50   AUCCAGCGACUAAUAAAAAAA   70 Target Full Sequence	2.5	Sequence 3953 from Patent EP2559767	NA	coding protein	psRNATarget