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BaseInfo

ncRNA ID osa-miR5486
Species Oryza sativa
Class miRNA
Genome position Chr3:26838891-26838977 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - AGGGGCUUGCAUAUUCUACCA - 31
Stem-loop(if miRNA) UU   U  -AAA       -   U      CCACCC C    -  AG
  GCG UG    GGGGCUU GCA AUUCUA      G UUGA GC  U
  ||| ||    ||||||| ||| ||||||      | |||| ||
  CGC AC    CUCCGGG CGU UAGGAU      C AACU CG  G
GU   C  CUCG       U   U      ------ C    A  CU
Stem-loop sequence UUGCGUUGAAAGGGGCUUGCAUAUUCUACCACCCGCUUGAGCAGUGUCGCAUCAACCUAGGAUUUGCUGGGCCUCGCUCCACCGCUG

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).