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BaseInfo

ncRNA ID novel_zma_miR335
Species Zea mays
Class miRNA
Genome position Chr5:30287993-30288155 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089713;SRR2089714;SRR2089715;SRR3341905;SRR2089702
Length 21
Mature sequence(if miRNA) 143 - UAUAUAAGUUGGAUUAUGGUA - 163
Stem-loop(if miRNA) --    U               A   A     A  GA         A       AC            A      A   GCA
  UAUA AAGUUGGAUUAUGGU GAA GGUAG AG  UAAAAUAUC CUUUAGA  CAUAAAUAAGCU AAAUAA CUA   A
  |||| ||||||||||||||| ||| ||||| ||  ||||||||| |||||||  |||||||||||| |||||| |||
  AUAU UUUAAUCUAAUAUCA CUU UCGUC UC  AUUUUAUGG GAAAUCU  GUGUUUAUUCGA UUUAUU GAU   U
UA    U               C   A     C  UC         A       -A            C      C   GAG
Stem-loop sequence UAUAUAAGUUGGAUUAUGGUAGAAAGGUAGAAGGAUAAAAUAUCACUUUAGAACCAUAAAUAAGCUAAAAUAAACUAGCAAUGAGUAGCUUAUUUCAGCUUAUUUGUGAUCUAAAGAGGUAUUUUACUCUCCUGCUAUUCCACUAUAAUCUAAUUUUUAUAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT064050.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  |||||||||||||=|||||||
targets:1648   UACCAUAAUCCAAUUUAUAUA   1668

1.5 Zea mays full-length cDNA clone ZM_BFc0133O08 mRNA, complete cds NA coding protein psRNATarget
BT037552.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  |||||||||||||=|||||||
targets:1210   UACCAUAAUCCAAUUUAUAUA   1230

1.5 Zea mays full-length cDNA clone ZM_BFb0179C04 mRNA, complete cds NA coding protein psRNATarget
BT037545.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  |||||||||||||=|||||||
targets:1109   UACCAUAAUCCAAUUUAUAUA   1129

1.5 Zea mays full-length cDNA clone ZM_BFb0178M07 mRNA, complete cds NA coding protein psRNATarget
NM_001350229.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  |||||||||||||=|||||||
targets:1109   UACCAUAAUCCAAUUUAUAUA   1129

1.5 Zea mays haloacid dehalogenase (HAD) superfamily protein (LOC100216900), mRNA NA coding protein psRNATarget
NM_001139196.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *||||||||||||||||||||
targets:1079   CACCAUAAUCCAACUUAUAUA   1099

0.0 Zea mays OSJNBa0029H02.27-like protein (pco137821), mRNA NA coding protein psRNATarget
BT036602.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *||||||||||||||||||||
targets:1079   CACCAUAAUCCAACUUAUAUA   1099

0.0 Zea mays full-length cDNA clone ZM_BFb0125H01 mRNA, complete cds NA coding protein psRNATarget
EU975471.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *||||||||||||||||||||
targets:812   CACCAUAAUCCAACUUAUAUA   832

0.0 Zea mays clone 490696 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008660268.2
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  ||==|||||||||||||||||
targets:3073   UAUUAUAAUCCAACUUAUAUA   3093

2.0 PREDICTED: Zea mays WW domain-containing protein (LOC100279861), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001174540.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  ||=|||||||||||||||=||
targets:2045   UAUCAUAAUCCAACUUAUGUA   2065

2.5 Zea mays putative sphingolipid transporter spinster homolog 2 (LOC100381734), mRNA NA coding protein psRNATarget
BT062131.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  ||=|||||||||||||||=||
targets:2045   UAUCAUAAUCCAACUUAUGUA   2065

2.5 Zea mays full-length cDNA clone ZM_BFb0217D24 mRNA, complete cds NA coding protein psRNATarget
EU948770.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  ||=|||||||||||||||=||
targets:815   UAUCAUAAUCCAACUUAUGUA   835

2.5 Zea mays clone 384422 mRNA sequence NA coding protein psRNATarget
AY107822.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  ||=|||||||||||||||=||
targets:300   UAUCAUAAUCCAACUUAUGUA   320

2.5 Zea mays PCO087182 mRNA sequence NA coding protein psRNATarget
XM_008645727.2
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *|||||||||||=||||||||
targets:3876   CACCAUAAUCCAGCUUAUAUA   3896

1.5 PREDICTED: Zea mays Translocase of chloroplast 159 chloroplastic (LOC100381654), transcript variant X1, mRNA NA coding protein psRNATarget
EU956753.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *||||||||=|||||||||||
targets:2448   CACCAUAAUUCAACUUAUAUA   2468

1.5 Zea mays clone 1572652 cytochrome P450 CYP97A16 mRNA, complete cds NA coding protein psRNATarget
NM_001319711.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *||||||||=|||||||||||
targets:2448   CACCAUAAUUCAACUUAUAUA   2468

1.5 Zea mays protein LUTEIN DEFICIENT 5, chloroplastic (LOC103627895), mRNA NA coding protein psRNATarget
AY112124.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *|||||||||=||||||||||
targets:33   CACCAUAAUCUAACUUAUAUA   53

1.5 Zea mays CL27759_1 mRNA sequence NA coding protein psRNATarget
XM_020551678.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *||=||||||||=||||||||
targets:712   CACUAUAAUCCAGCUUAUAUA   732

2.5 PREDICTED: Zea mays RNA recognition motif containing protein (LOC100282725), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541956.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *|==|||||||||||||||||
targets:666   CAUUAUAAUCCAACUUAUAUA   686

2.0 PREDICTED: Zea mays U-box domain-containing protein 33-like (LOC109941340), mRNA NA coding protein psRNATarget
BT084593.2
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *|||=||||||||=|||||||
targets:16   CACCGUAAUCCAAUUUAUAUA   36

2.5 Zea mays full-length cDNA clone ZM_BFb0138P10 mRNA, complete cds NA coding protein psRNATarget
XM_008656975.2
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *|*||||||=|||||||||||
targets:1369   CAGCAUAAUUCAACUUAUAUA   1389

2.5 PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103634594), mRNA NA coding protein psRNATarget
EU949360.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *|*||||||=|||||||||||
targets:1375   CAGCAUAAUUCAACUUAUAUA   1395

2.5 Zea mays clone 403134 mRNA sequence NA coding protein psRNATarget
EU965413.1
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  *|=|||||||||||*||||||
targets:382   GAUCAUAAUCCAACCUAUAUA   402

2.5 Zea mays clone 285855 mRNA sequence NA coding protein psRNATarget
AY109926.2
ncRNA:21   AUGGUAUUAGGUUGAAUAUAU   1
  **|*|||||=|||||||||||
targets:96   NNCAAUAAUUCAACUUAUAUA   116

2.5 Zea mays CL32876_1 mRNA sequence NA coding protein psRNATarget
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