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BaseInfo

ncRNA ID	novel_zma_miR334
Species	Zea mays
Class	miRNA
Genome position	Chr4:112126399-112126500 [-]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	1 - UCGUGUCUAAAUGUGUCACACUUU - 24
Stem-loop(if miRNA)	--         G  GC     A    AAG        AUGCG    AAAAAGA   AGUGUGGCG GU  AGAUA CGGA   AAGCAGCC     GAGU       A   ||||||||| ||  ||||| ||||   ||||||||     ||||   UCACACUGU UA  UCUGU GCUU   UUUGUCGG     UUUA       A UU         G  AA     -    -GG        --GAA    CAAGAUA
Stem-loop sequence	AGUGUGGCGGGUGCAGAUAACGGAAAGAAGCAGCCAUGCGGAGUAAAAAGAAAAUAGAACAUUUAAGGGCUGUUUGGUUCGUGUCUAAAUGUGUCACACUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY109434.1	ncRNA:24   UUUCACACUGUGUAAAUCUGUGCU   1   ||||||||=||||||||||=|||| targets:473   AAAGUGUGGCACAUUUAGAUACGA   496 Target Full Sequence	2.5	Zea mays CL2997_-2 mRNA sequence	NA	coding protein	psRNATarget
EU960142.1	ncRNA:24   UUUCACACUGUGUAAAUCUGUGCU   1   ||||||||||||||||||*||||| targets:1161   AAAGUGUGACACAUUUAGCCACGA   1184 Target Full Sequence	1.5	Zea mays clone 222128 microtubule-associated protein RP/EB family member 3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549322.1	ncRNA:24   UUUCACACUGUGUAAAUCUGUGCU   1   |||*||||=||||||||||||||| targets:1267   AAAAUGUGGCACAUUUAGACACGA   1290 Target Full Sequence	1.0	PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase-like (LOC109939280), mRNA	NA	coding protein	psRNATarget
XM_008671564.2	ncRNA:24   UUUCACACUGUGUAAAUCUGUGCU   1   |||*||||=||||||||||||||| targets:1267   AAAAUGUGGCACAUUUAGACACGA   1290 Target Full Sequence	1.0	PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase (LOC103646970), mRNA	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   UUUCACACUGUGUAAAUCUGUGCU   1   ||||||||=|||||||||*||||| targets:784   AAAGUGUGGCACAUUUAGCCACGA   807 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   UUUCACACUGUGUAAAUCUGUGCU   1   ||||||||=|||||||||*||||| targets:784   AAAGUGUGGCACAUUUAGCCACGA   807 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   UUUCACACUGUGUAAAUCUGUGCU   1   ||||||||=|||||||||*||||| targets:784   AAAGUGUGGCACAUUUAGCCACGA   807 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   UUUCACACUGUGUAAAUCUGUGCU   1   ||||||||=|||||||||*||||| targets:2749   AAAGUGUGGCACAUUUAGCCACGA   2772 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670504.2	ncRNA:24   UUUCACACUGUGUAAAUCUGUGCU   1   |||||||*||||||||||*||||| targets:71   AAAGUGUAACACAUUUAGCCACGA   94 Target Full Sequence	2.5	PREDICTED: Zea mays Alternative oxidase (LOC103645788), mRNA	NA	coding protein	psRNATarget