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BaseInfo

ncRNA ID	osa-miR166i-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:25294953-25295097 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	15 - AAUGCAGUUUGAUCCAAGAUC - 35
Stem-loop(if miRNA)	AGAUA     UU      C          A            -------      -G  -      --A       U      GGUGU  GGAAUG AGUUUGAUCC AGAUCUGCCUAU       AUAUAU  GU GUGUAU   UCAUAUC U      |||||  |||||| |||||||||| ||||||||||||       ||||||  || ||||||   |||||||      CCACA  CCUUAC UCGGACUAGG UCUAGAUGGAUG       UGUGUG  CA CGUAUA   GGUAUAG G CAUAA     CU      U          C            GGGACAG      GA  A      GGG       U
Stem-loop sequence	AGAUAGGUGUUUGGAAUGCAGUUUGAUCCAAGAUCUGCCUAUAUAUAUGGUGUGUAUAUCAUAUCUUGUGAUAUGGGGGAUAUGCAACAGGUGUGUGACAGGGGUAGGUAGAUCUCGGAUCAGGCUUCAUUCCUCACACCAAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288397.1	ncRNA:21   CUAGAACCUAGUUUGACGUAA   1   ||||||||||||||||||||| targets:1345   GAUCUUGGAUCAAACUGCAUU   1365 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090028B18, full insert sequence	NA	coding protein	psRNATarget
AK107341.1	ncRNA:21   CUAGAACCUAGUUUGACGUAA   1   |*|||||*|||*||||||||| targets:1372   GUUCUUGCAUCCAACUGCAUU   1392 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-126-G03, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).