Search result

BaseInfo

ncRNA ID ath-miRf10011-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - CGGAUCCGGAUACGGAUCCGG - NA
Stem-loop(if miRNA) U   -              A    -    AGAAAACCGAAUAA   GGUGCGACGGAUCCGGAUA
 UCG AAUCCGGAUCCGUG UCCG AUCC              CCG                   C
 ||| |||||||||||||| |||| ||||              |||
 AGU UUAGGCCUAGGCAU AGGC UAGG              GGC                   G
A   A              -    C    -------------C   CUAAGCAUUUACGAAAUGG
Stem-loop sequence UUCGAAUCCGGAUCCGUGAUCCGAUCCAGAAAACCGAAUAACCGGGUGCGACGGAUCCGGAUACGGGUAAAGCAUUUACGAAUCCGGCGGAUCCGGAUACGGAUCCGGAUUAUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_180177.2
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||||||||*|||||||||||
targets:559   CCGGAUCCGCAUCCGGAUCCG   579

1.5 Arabidopsis thaliana transmembrane protein mRNA transmembrane protein(AT3G03870) coding protein psRNATarget
NM_111258.4
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||||||||*|||||||||||
targets:714   CCGGAUCCGCAUCCGGAUCCG   734

1.5 Arabidopsis thaliana transmembrane protein mRNA transmembrane protein(AT3G03870) coding protein psRNATarget
AY085985.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||||||||*|||||||||||
targets:425   CCGGAUCCGCAUCCGGAUCCG   445

1.5 Arabidopsis thaliana clone 20442 mRNA, complete sequence NA coding protein psRNATarget
NM_124901.5
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||||||||*|||||||||||
targets:52   CCGGAUCCGGAUCCGGAUCCG   72

1.5 Arabidopsis thaliana RAN GTPase 3 (RAN3), mRNA RAN GTPase 3(RAN3) coding protein psRNATarget
AY080808.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||||||||*|||||||||||
targets:477   CCGGAUCCGCAUCCGGAUCCG   497

1.5 Arabidopsis thaliana unknown protein (At3g03870) mRNA, complete cds NA coding protein psRNATarget
NM_125365.2
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |=|||||||*|||||||||||
targets:1998   CUGGAUCCGGAUCCGGAUCCG   2018

1.5 Arabidopsis thaliana exocyst subunit exo70 family protein H7 (EXO70H7), mRNA exocyst subunit exo70 family protein H7(EXO70H7) coding protein psRNATarget
AY045671.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |=|||||||*|||||||||||
targets:1998   CUGGAUCCGGAUCCGGAUCCG   2018

1.5 Arabidopsis thaliana AT5g59730/mth12_130 mRNA, complete cds NA coding protein psRNATarget
AY034910.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |=|||||||*|||||||||||
targets:1994   CUGGAUCCGGAUCCGGAUCCG   2014

1.5 Arabidopsis thaliana unknown protein (At5g59730) mRNA, complete cds NA coding protein psRNATarget
AF360179.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |=|||||||*|||||||||||
targets:1993   CUGGAUCCGGAUCCGGAUCCG   2013

1.5 Arabidopsis thaliana unknown protein (At5g59730) mRNA, complete cds NA coding protein psRNATarget
NM_001037028.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |=|||||||*|||||||||||
targets:1998   CUGGAUCCGGAUCCGGAUCCG   2018

1.5 Arabidopsis thaliana exocyst subunit exo70 family protein H7 (EXO70H7), mRNA exocyst subunit exo70 family protein H7(EXO70H7) coding protein psRNATarget
BT000774.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |=|||||||*|||||||||||
targets:1993   CUGGAUCCGGAUCCGGAUCCG   2013

1.5 Arabidopsis thaliana clone RAFL05-05-L07 (R09874) unknown protein (At5g59730) mRNA, complete cds NA coding protein psRNATarget
AY063096.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |=|||||||*|||||||||||
targets:1832   CUGGAUCCGGAUCCGGAUCCG   1852

1.5 Arabidopsis thaliana unknown protein (At5g59730) mRNA, complete cds NA coding protein psRNATarget
AY060527.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |=|||||||*|||||||||||
targets:1832   CUGGAUCCGGAUCCGGAUCCG   1852

1.5 Arabidopsis thaliana AT5g59730/mth12_130 mRNA, complete cds NA coding protein psRNATarget
BX830250.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |=|||||||*|||||||||||
targets:622   CUGGAUCCGGAUCCGGAUCCG   642

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB68ZG12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_129624.5
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ==|||||||*|||||||||||
targets:541   UUGGAUCCGGAUCCGGAUCCG   561

1.5 Arabidopsis thaliana Basic-leucine zipper (bZIP) transcription factor family protein mRNA Basic-leucine zipper (bZIP) transcription factor family protein(AT2G40620) coding protein psRNATarget
Z86093.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ==|||||||*|||||||||||
targets:313   UUGGAUCCGGAUCCGGAUCCG   333

1.5 A.thaliana mRNA for b-Zip DNA binding protein NA coding protein psRNATarget
BX819135.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ==|||||||*|||||||||||
targets:336   UUGGAUCCGGAUCCGGAUCCG   356

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB4ZF10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX820893.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ==|||||||*|||||||||||
targets:303   UUGGAUCCGGAUCCGGAUCCG   323

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH79ZF11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX820802.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ==|||||||*|||||||||||
targets:291   UUGGAUCCGGAUCCGGAUCCG   311

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH70ZC04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY074269.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ==|||||||*|||||||||||
targets:300   UUGGAUCCGGAUCCGGAUCCG   320

1.5 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds NA coding protein psRNATarget
AY096746.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ==|||||||*|||||||||||
targets:230   UUGGAUCCGGAUCCGGAUCCG   250

1.5 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds NA coding protein psRNATarget
NM_111108.4
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  =*|||||||*|||||||||||
targets:3217   UAGGAUCCGGAUCCGGAUCCG   3237

1.5 Arabidopsis thaliana alpha/beta-Hydrolases superfamily protein (ICME-LIKE2), mRNA alpha/beta-Hydrolases superfamily protein(ICME-LIKE2) coding protein psRNATarget
NM_123505.4
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||||||=||*|||||||||||
targets:448   CCGGAUUCGGAUCCGGAUCCG   468

2.5 Arabidopsis thaliana RING/U-box superfamily protein mRNA RING/U-box superfamily protein(AT5G41400) coding protein psRNATarget
BT002979.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||||||=||*|||||||||||
targets:350   CCGGAUUCGGAUCCGGAUCCG   370

2.5 Arabidopsis thaliana clone RAFL15-03-I12 (R20436) putative RING zinc finger protein (At5g41400) mRNA, complete cds NA coding protein psRNATarget
AY086024.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||||||=||*|||||||||||
targets:350   CCGGAUUCGGAUCCGGAUCCG   370

2.5 Arabidopsis thaliana clone 207148 mRNA, complete sequence NA coding protein psRNATarget
BX831481.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||||||=||*|||||||||||
targets:333   CCGGAUUCGGAUCCGGAUCCG   353

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS9ZB09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX833667.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||||||=||*|||||||||||
targets:325   CCGGAUUCGGAUCCGGAUCCG   345

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL6ZA03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT004422.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||||||=||*|||||||||||
targets:287   CCGGAUUCGGAUCCGGAUCCG   307

2.5 Arabidopsis thaliana clone U20436 putative RING zinc finger protein (At5g41400) mRNA, complete cds NA coding protein psRNATarget
NM_111107.2
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  =||||||||*||||||||||*
targets:448   UCGGAUCCGGAUCCGGAUCCU   468

2.5 Arabidopsis thaliana SMAD/FHA domain-containing protein mRNA SMAD/FHA domain-containing protein(AT3G02400) coding protein psRNATarget
NM_001337404.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  =||||||||*||||||||||*
targets:551   UCGGAUCCGGAUCCGGAUCCU   571

2.5 Arabidopsis thaliana SMAD/FHA domain-containing protein mRNA SMAD/FHA domain-containing protein(AT3G02400) coding protein psRNATarget
NM_001345149.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||||||*||*|||||||||||
targets:472   CCGGAUACGGAUCCGGAUCCG   492

2.5 Arabidopsis thaliana hypothetical protein partial mRNA hypothetical protein(AT5G55790) coding protein psRNATarget
NM_001345150.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||||||*||*|||||||||||
targets:472   CCGGAUACGGAUCCGGAUCCG   492

2.5 Arabidopsis thaliana hypothetical protein partial mRNA hypothetical protein(AT5G55790) coding protein psRNATarget
NM_111488.4
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||*|||||||||||*|||||
targets:1730   CCGCAUCCGUAUCCGUAUCCG   1750

2.5 Arabidopsis thaliana Heavy metal transport/detoxification superfamily protein mRNA Heavy metal transport/detoxification superfamily protein(AT3G06130) coding protein psRNATarget
AF326899.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||*|||||||||||*|||||
targets:1562   CCGCAUCCGUAUCCGUAUCCG   1582

2.5 Arabidopsis thaliana unknown protein (At3g06130) mRNA, complete cds NA coding protein psRNATarget
AY045685.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||*|||||||||||*|||||
targets:1562   CCGCAUCCGUAUCCGUAUCCG   1582

2.5 Arabidopsis thaliana AT3g06130/F28L1_7 mRNA, complete cds NA coding protein psRNATarget
NM_001202893.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||*|||||||||||*|||||
targets:1369   CCGCAUCCGUAUCCGUAUCCG   1389

2.5 Arabidopsis thaliana Heavy metal transport/detoxification superfamily protein mRNA Heavy metal transport/detoxification superfamily protein(AT3G06130) coding protein psRNATarget
AF349519.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||*|||||||||||*|||||
targets:1312   CCGCAUCCGUAUCCGUAUCCG   1332

2.5 Arabidopsis thaliana unknown protein (At3g06130) mRNA, complete cds NA coding protein psRNATarget
AY149962.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||*|||||||||||*|||||
targets:1312   CCGCAUCCGUAUCCGUAUCCG   1332

2.5 Arabidopsis thaliana At3g06130/F28L1_7 mRNA, complete cds NA coding protein psRNATarget
BX823966.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  |||*|||||||||||*|||||
targets:626   CCGCAUCCGUAUCCGUAUCCG   646

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH10ZG03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_124961.2
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||||||*||*|||||||||||
targets:472   CCGGAUACGGAUCCGGAUCCG   492

2.5 Arabidopsis thaliana hypothetical protein partial mRNA hypothetical protein(AT5G55790) coding protein psRNATarget
BT029993.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||||||*||*|||||||||||
targets:472   CCGGAUACGGAUCCGGAUCCG   492

2.5 Arabidopsis thaliana At5g55790 mRNA, complete cds NA coding protein psRNATarget
AK176033.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||||||*||*|||||||||||
targets:342   CCGGAUACGGAUCCGGAUCCG   362

2.5 Arabidopsis thaliana mRNA, partial cds, clone: RAFL22-75-H17 NA coding protein psRNATarget
AY735691.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  *=|||||=|*|||||||||||
targets:2586   AUGGAUCUGGAUCCGGAUCCG   2606

2.5 Arabidopsis thaliana hypothetical protein AT5G27230 mRNA, complete cds NA coding protein psRNATarget
NM_122605.2
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  *=|||||=|*|||||||||||
targets:2586   AUGGAUCUGGAUCCGGAUCCG   2606

2.5 Arabidopsis thaliana Frigida-like protein mRNA Frigida-like protein(AT5G27230) coding protein psRNATarget
DQ459197.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  *=|||||=|*|||||||||||
targets:749   AUGGAUCUGGAUCCGGAUCCG   769

2.5 Arabidopsis thaliana unknown (At5g27230) mRNA, complete cds NA coding protein psRNATarget
NM_120297.4
ncRNA:21   GGCCUA-GGCAUAGGCCUAGGC   1
  *=||=|-|||||||||||||||
targets:713   AUGGGUUCCGUAUCCGGAUCCG   734

3.0 Arabidopsis thaliana Eukaryotic aspartyl protease family protein (PCS1), mRNA Eukaryotic aspartyl protease family protein(PCS1) coding protein psRNATarget
AK226937.1
ncRNA:21   GGCCUA-GGCAUAGGCCUAGGC   1
  *=||=|-|||||||||||||||
targets:671   AUGGGUUCCGUAUCCGGAUCCG   692

3.0 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-27-M17 NA coding protein psRNATarget
BX829870.1
ncRNA:21   GGCCUA-GGCAUAGGCCUAGGC   1
  *=||=|-|||||||||||||||
targets:564   AUGGGUUCCGUAUCCGGAUCCG   585

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB41ZH06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT015130.1
ncRNA:21   GGCCUA-GGCAUAGGCCUAGGC   1
  *=||=|-|||||||||||||||
targets:564   AUGGGUUCCGUAUCCGGAUCCG   585

3.0 Arabidopsis thaliana At5g02190 gene, complete cds NA coding protein psRNATarget
BT015855.1
ncRNA:21   GGCCUA-GGCAUAGGCCUAGGC   1
  *=||=|-|||||||||||||||
targets:559   AUGGGUUCCGUAUCCGGAUCCG   580

3.0 Arabidopsis thaliana At5g02190 gene, complete cds NA coding protein psRNATarget
AK220579.1
ncRNA:21   GGCCUAGGCAUAGGCCUAGGC   1
  ||*||*||||||||||||||*
targets:48   CCCGACCCGUAUCCGGAUCCA   68

3.0 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-46-N06 NA coding protein psRNATarget
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