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BaseInfo

ncRNA ID novel_zma_miR323
Species Zea mays
Class miRNA
Genome position Chr5:35739696-35739877 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089706;SRR2089708
Length 21
Mature sequence(if miRNA) 162 - AUAUAAUAGGAGUAGGAUGGA - 182
Stem-loop(if miRNA) --    A      A                            C      A    -GCUAUAAC       UA   UUUCUGACAAGUUUAAA
  CAUC UACUCC AUUAUAUGCAAAAUUUCAAGUUCAAAUU GUUAUA UUUA         AAAAAGA  AAA                 U
  |||| |||||| |||||||||||||||||||||||||||| |||||| ||||         |||||||  |||
  GUAG AUGAGG UAAUAUAUGUUUUAAAGUUCAAGUUUAA CAAUAU AAAU         UUUUUCU  UCG                 U
AG    G      A                            A      A    AUACAUUAU       -C   UGAAAUCGGCUAAAAUA
Stem-loop sequence CAUCAUACUCCAAUUAUAUGCAAAAUUUCAAGUUCAAAUUCGUUAUAAUUUAGCUAUAACAAAAAGAUAAAAUUUCUGACAAGUUUAAAUUAUAAAAUCGGCUAAAGUGCUCUCUUUUUUAUUACAUAUAAAAUAUAACAAAUUUGAACUUGAAAUUUUGUAUAUAAUAGGAGUAGGAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008675593.2
ncRNA:21   AGGUAGGAUGAGGAUAAUAUA   1
  ||||||=||||||*|||||||
targets:1265   UCCAUCUUACUCCAAUUAUAU   1285

2.5 PREDICTED: Zea mays uncharacterized LOC103649908 (LOC103649908), mRNA NA coding protein psRNATarget