ncRNA ID | osa-miR166i-3p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr3:25294953-25295097 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 115 - UCGGAUCAGGCUUCAUUCCUC - 135 |
Stem-loop(if miRNA) |
AGAUA UU C A ------- -G - --A U GGUGU GGAAUG AGUUUGAUCC AGAUCUGCCUAU AUAUAU GU GUGUAU UCAUAUC U ||||| |||||| |||||||||| |||||||||||| |||||| || |||||| ||||||| CCACA CCUUAC UCGGACUAGG UCUAGAUGGAUG UGUGUG CA CGUAUA GGUAUAG G CAUAA CU U C GGGACAG GA A GGG U |
Stem-loop sequence | AGAUAGGUGUUUGGAAUGCAGUUUGAUCCAAGAUCUGCCUAUAUAUAUGGUGUGUAUAUCAUAUCUUGUGAUAUGGGGGAUAUGCAACAGGUGUGUGACAGGGGUAGGUAGAUCUCGGAUCAGGCUUCAUUCCUCACACCAAUAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288397.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J090028B18, full insert sequence | NA | coding protein | psRNATarget |
1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
2 | PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011). |