Search result

BaseInfo

ncRNA ID novel_zma_miR318
Species Zea mays
Class miRNA
Genome position Chr5:84610593-84610668 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089712;SRR2089713;SRR2089715;SRR2287161;SRR2287162;SRR2287164;SRR2287165;SRR3385651;SRR4237220;SRR4237224;SRR4237225;SRR4237226;SRR1997865;SRR4237227;SRR5105959;SRR5105963;SRR5451003;SRR5451004;SRR1997866;SRR2089701
Length 21
Mature sequence(if miRNA) 1 - UCACCAGCGCUGCACUCAAUU - 21
Stem-loop(if miRNA) --     C         A      A     CGU   UCC
  UUGAG GCAGCGUUG UGAGCC GCCGC   GCC   C
  ||||| ||||||||| |||||| |||||   |||   C
  AACUC CGUCGCGAC ACUCGG CGGCG   CGG   U
UU     A         C      -     --U   CUG
Stem-loop sequence UUGAGCGCAGCGUUGAUGAGCCAGCCGCCGUGCCUCCCCUGUCGGCUGCGGCGGCUCACCAGCGCUGCACUCAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403069.1
ncRNA:21   UUAACUCACGUCGCGACCACU   1
  |||||||||||||||||||||
targets:9   AAUUGAGUGCAGCGCUGGUGA   29

0.0 Sequence 1194 from Patent EP2074227 NA coding protein psRNATarget
JB163530.1
ncRNA:21   UUAACUCACGUCGCGACCACU   1
  |||||||||||||||||||||
targets:9   AAUUGAGUGCAGCGCUGGUGA   29

0.0 Sequence 1194 from Patent EP2559767 NA coding protein psRNATarget
JB163818.1
ncRNA:21   UUAACUCACGUCGCGACCACU   1
  |||||||||||||||||||||
targets:9   AAUUGAGUGCAGCGCUGGUGA   29

0.0 Sequence 1482 from Patent EP2559767 NA coding protein psRNATarget
LQ235199.1
ncRNA:21   UUAACUCACGUCGCGACCACU   1
  |||||||||||||||||||||
targets:9   AAUUGAGUGCAGCGCUGGUGA   29

0.0 Sequence 1194 from Patent EP2985353 NA coding protein psRNATarget
HI403357.1
ncRNA:21   UUAACUCACGUCGCGACCACU   1
  |||||||||||||||||||||
targets:9   AAUUGAGUGCAGCGCUGGUGA   29

0.0 Sequence 1482 from Patent EP2074227 NA coding protein psRNATarget
LQ235487.1
ncRNA:21   UUAACUCACGUCGCGACCACU   1
  |||||||||||||||||||||
targets:9   AAUUGAGUGCAGCGCUGGUGA   29

0.0 Sequence 1482 from Patent EP2985353 NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.