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BaseInfo

ncRNA ID	novel_zma_miR317
Species	Zea mays
Class	miRNA
Genome position	Chr10:87319013-87319062 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	27 - GGAUUGAUAUGGAUUGGAGGAGAU - 50
Stem-loop(if miRNA)	--UA              G    GG     UUUUCAAUCCAUAU GAUU  A     |||||||||||||| ||||     GGAGGUUAGGUAUA UUAG  G UAGA              G    GG
Stem-loop sequence	UAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUAUGGAUUGGAGGAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008666525.2	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*|||||||||||||||||||| targets:900   AUCACCUCCAAUCCAUAUCAAUCC   923 Target Full Sequence	0.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*|||||||||||||||||||| targets:828   AUCACCUCCAAUCCAUAUCAAUCC   851 Target Full Sequence	0.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*|||||||||||||||||||| targets:827   AUCACCUCCAAUCCAUAUCAAUCC   850 Target Full Sequence	0.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*|||||||||||||||||||| targets:829   AUCACCUCCAAUCCAUAUCAAUCC   852 Target Full Sequence	0.0	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*|||||||||||||||||||| targets:881   AUCACCUCCAAUCCAUAUCAAUCC   904 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*||||||||||=||||||||| targets:284   AUCCCCUCCAAUCCGUAUCAAUCC   307 Target Full Sequence	1.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*||||||||||=||||||||| targets:1480   AUCCCCUCCAAUCCGUAUCAAUCC   1503 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*||||||||||=||||||||| targets:1480   AUCCCCUCCAAUCCGUAUCAAUCC   1503 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*||||||||||=||||||||| targets:1466   AUCCCCUCCAAUCCGUAUCAAUCC   1489 Target Full Sequence	1.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*||||||||||=||||||||| targets:1448   AUCCCCUCCAAUCCGUAUCAAUCC   1471 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*||||||||||=||||||||| targets:1404   AUCCCCUCCAAUCCGUAUCAAUCC   1427 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*||||||||||=||||||||| targets:1068   AUCCCCUCCAAUCCGUAUCAAUCC   1091 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*||||||||||=||||||||| targets:1030   AUCCCCUCCAAUCCGUAUCAAUCC   1053 Target Full Sequence	1.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*||||||||||=||||||||| targets:767   AUCCCCUCCAAUCCGUAUCAAUCC   790 Target Full Sequence	1.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*|=||||||||=||||||||| targets:959   AUCCCUUCCAAUCCGUAUCAAUCC   982 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*||||||**|||||||||||| targets:827   AUCACCUCCAMYCCAUAUCAAUCC   850 Target Full Sequence	2.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||||=*=|||||||||||||||| targets:428   AUCUCUCUCAAUCCAUAUCAAUCC   451 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   UAGAGGAGGUUAGGUAUAGUUAGG   1   |||*=|||=|||||=||||||||| targets:1613   AUCCUCUCUAAUCCGUAUCAAUCC   1636 Target Full Sequence	2.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget