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BaseInfo

ncRNA ID novel_zma_miR315
Species Zea mays
Class miRNA
Genome position Chr5:93978823-93979009 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2287163;SRR2287165
Length 24
Mature sequence(if miRNA) 164 - GAACCUGGUGUGGCUGAACCGGAU - 187
Stem-loop(if miRNA) --    C                         A       A A   -C      U     A         AG          A  -UA      U
  GAAC UGGUGUGGCUGAACCGGAUGGCACC UUGGGCC G GAU  CCUCUA UUAUU GAAGCCUAG  CUUCAAAUAU UA   UAUAUA A
  |||| ||||||||||||||||||||||||| ||||||| | |||  |||||| ||||| |||||||||  |||||||||| ||   ||||||
  CUUG ACUACACCGACUUGGCCUACCGUGG GACUCGG C CUG  GGAGAU AAUAA CUUCGGGUU  GAGGUUUAUA GU   AUAUAU U
GG    A                         C       A -   AA      C     C         CU          A  UUG      A
Stem-loop sequence GAACCUGGUGUGGCUGAACCGGAUGGCACCAUUGGGCCAGAGAUCCCUCUAUUUAUUAGAAGCCUAGAGCUUCAAAUAUAUAUAUAUAUAUAUAUAUAUAGUUUGAAUAUUUGGAGUCUUGGGCUUCCAAUAACUAGAGGAAGUCCAGGCUCAGCGGUGCCAUCCGGUUCAGCCACAUCAAGUUCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020544200.1
ncRNA:24   UAGGCCAAGUCGGUGUGGUCCAAG   1
  ||||||||=||||=||||||||||
targets:577   AUCCGGUUUAGCCGCACCAGGUUC   600

2.5 PREDICTED: Zea mays uncharacterized LOC109942302 (LOC109942302), mRNA NA coding protein psRNATarget