ncRNA ID | novel_zma_miR315 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr5:93978823-93979009 [-] |
Reference genome | RefGen_v4 |
Source | SRR2089709;SRR2287163;SRR2287165 |
Length | 24 |
Mature sequence(if miRNA) | 164 - GAACCUGGUGUGGCUGAACCGGAU - 187 |
Stem-loop(if miRNA) |
--    C                         A       A A   -C      U     A         AG          A  -UA      U   GAAC UGGUGUGGCUGAACCGGAUGGCACC UUGGGCC G GAU  CCUCUA UUAUU GAAGCCUAG  CUUCAAAUAU UA   UAUAUA A   |||| ||||||||||||||||||||||||| ||||||| | |||  |||||| ||||| |||||||||  |||||||||| ||   ||||||   CUUG ACUACACCGACUUGGCCUACCGUGG GACUCGG C CUG  GGAGAU AAUAA CUUCGGGUU  GAGGUUUAUA GU   AUAUAU U GG    A                         C       A -   AA      C     C         CU          A  UUG      A |
Stem-loop sequence | GAACCUGGUGUGGCUGAACCGGAUGGCACCAUUGGGCCAGAGAUCCCUCUAUUUAUUAGAAGCCUAGAGCUUCAAAUAUAUAUAUAUAUAUAUAUAUAUAGUUUGAAUAUUUGGAGUCUUGGGCUUCCAAUAACUAGAGGAAGUCCAGGCUCAGCGGUGCCAUCCGGUUCAGCCACAUCAAGUUCGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020544200.1 |
|
2.5 | PREDICTED: Zea mays uncharacterized LOC109942302 (LOC109942302), mRNA | NA | coding protein | psRNATarget |