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BaseInfo

ncRNA ID	novel_zma_miR312
Species	Zea mays
Class	miRNA
Genome position	Chr5:29969106-29969255 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287031;SRR2287162;SRR2287163;SRR5451003;SRR5451004;SRR5451006;SRR2089702;SRR2089706;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	127 - UCACCGGACUGUUUGGUGUGCCAG - 150
Stem-loop(if miRNA)	--            U        UG     A    GU        -CCCAG   U  A  --A       CUUGCC   U   GGCGCACCGAAC GUCCGGUG  CCACC GACA  GUCCGGUG      GGC GA CG   CUUCAAA      ACC U   |||||||||||| ||||||||  ||||| ||||  ||||||||      ||| || ||   |||||||      |||   CCGUGUGGUUUG CAGGCCAC  GGUGG CUGU  CAGGCCAC      UCG CU GC   GAGGUUU      UGG C GA            U        UG     C    --        UUAAUA   C  C  CGA       -----U   G
Stem-loop sequence	GGCGCACCGAACUGUCCGGUGUGCCACCAGACAGUGUCCGGUGCCCAGGGCUGAACGACUUCAAACUUGCCACCUUCGGGUUUUUGGAGAGCCGCUCCGCUAUAAUUCACCGGACUGUCCGGUGGGUCACCGGACUGUUUGGUGUGCCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241540.1	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ||||||||||==|||||||||||| targets:12   CUGGCACACCGGACAGUCCGGUGA   35 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ||||||||||==|||||||||||| targets:12   CUGGCACACCGGACAGUCCGGUGA   35 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ||||||||||==|||||||||||| targets:12   CUGGCACACCGGACAGUCCGGUGA   35 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ||||||||||==|||||||||||| targets:697   CUGGCACACCGGACAGUCCGGUGA   720 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ***|||||||==|||||||||||| targets:601   GGUGCACACCGGACAGUCCGGUGA   624 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ***|||||||==|||||||||||| targets:715   GGUGCACACCGGACAGUCCGGUGA   738 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ***|||||||==|||||||||||| targets:715   GGUGCACACCGGACAGUCCGGUGA   738 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ***|||||||==|||||||||||| targets:698   GGUGCACACCGGACAGUCCGGUGA   721 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ***|||||||==|||||||||||| targets:698   GGUGCACACCGGACAGUCCGGUGA   721 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   GAC--C-GUGUGGUUUGUCAGGCCACU   1   |||--|-|*||||=||||||||||||| targets:745   CUGAAGACUCACCGAACAGUCCGGUGA   771 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
HI409089.1	ncRNA:24   GAC------CGUGUGGUUUGUCAGGCCACU   1   |||------|||||||||||||||=||||* targets:189   CUGUCCAGUGCACACCAAACAGUCUGGUGC   218 Target Full Sequence	2.5	Sequence 7214 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241219.1	ncRNA:24   GAC------CGUGUGGUUUGUCAGGCCACU   1   |||------|||||||||||||||=||||* targets:189   CUGUCCAGUGCACACCAAACAGUCUGGUGC   218 Target Full Sequence	2.5	Sequence 7214 from Patent EP2985353	NA	coding protein	psRNATarget
JB169550.1	ncRNA:24   GAC------CGUGUGGUUUGUCAGGCCACU   1   |||------|||||||||||||||=||||* targets:189   CUGUCCAGUGCACACCAAACAGUCUGGUGC   218 Target Full Sequence	2.5	Sequence 7214 from Patent EP2559767	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ***|||||||==|||||||||||| targets:737   GGUGCACACCGGACAGUCCGGUGA   760 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ***|||||||==|||||||||||| targets:737   GGUGCACACCGGACAGUCCGGUGA   760 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ***|||||||==|||||||||||| targets:562   GGUGCACACCGGACAGUCCGGUGA   585 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ***|||||||==|||||||||||| targets:562   GGUGCACACCGGACAGUCCGGUGA   585 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ***|||||||==|||||||||||| targets:410   GGUGCACACCGGACAGUCCGGUGA   433 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   GACCGUGUGGUUUGUCAGGCCACU   1   ***|||||||==|||||||||||| targets:4610   GGUGCACACCGGACAGUCCGGUGA   4633 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget