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BaseInfo

ncRNA ID	novel_zma_miR311
Species	Zea mays
Class	miRNA
Genome position	Chr4:156365511-156365616 [-]
Reference genome	RefGen_v4
Source	SRR1583943;SRR2647385;SRR2647387;SRR2647388;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - GAACUAACUUUAGACAGAAAAGUU - 24
Stem-loop(if miRNA)	--     A            A GG   AU UG     U   ---   -   -U  CAC   CUUUU UGUCUAAGGUUA G  UCU  U  GUUCG GAC   UAA CUU  GC   A   ||||| |||||||||||| |  |||  |  ||||| |||   ||| |||  ||   GAAAA ACAGAUUUCAAU C  AGA  A  UAAGU CUG   AUU GAA  CG   C UU     G            - -A   -- GU     -   UUA   A   UU  UUU
Stem-loop sequence	CUUUUAUGUCUAAGGUUAAGGGUCUAUUUGGUUCGUGACUAACUUUGCCACACUUUGCUUAAGAUUAAUUGUCUGAAUUGAAGAACUAACUUUAGACAGAAAAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT018862.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||| targets:1073   AACUUUUCUGUCUAAGGUUAGUUC   1096 Target Full Sequence	1.5	Zea mays clone EL01N0559E06.d mRNA sequence	NA	coding protein	psRNATarget
XM_020549322.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||| targets:1217   AACUUUUCUGUCUAAGGUUAGUUC   1240 Target Full Sequence	1.5	PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase-like (LOC109939280), mRNA	NA	coding protein	psRNATarget
XM_008671564.2	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||| targets:1217   AACUUUUCUGUCUAAGGUUAGUUC   1240 Target Full Sequence	1.5	PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase (LOC103646970), mRNA	NA	coding protein	psRNATarget
EU958119.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||| targets:957   AACUUUUCUGUCUAAGGUUAGUUC   980 Target Full Sequence	1.5	Zea mays clone 1674247 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149797.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||| targets:957   AACUUUUCUGUCUAAGGUUAGUUC   980 Target Full Sequence	1.5	Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||= targets:1508   AACUUUUCUGUCUAAGGUUAGUUU   1531 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   =||||||||||||||=|||||||| targets:43   GACUUUUCUGUCUAAGGUUAGUUC   66 Target Full Sequence	1.5	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   =||||||||||||||=|||||||| targets:43   GACUUUUCUGUCUAAGGUUAGUUC   66 Target Full Sequence	1.5	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
JB163753.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   =||||||||||||||=|||||||| targets:43   GACUUUUCUGUCUAAGGUUAGUUC   66 Target Full Sequence	1.5	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||= targets:43   AACUUUUCUGUCUAAGGUUAGUUU   66 Target Full Sequence	2.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||= targets:43   AACUUUUCUGUCUAAGGUUAGUUU   66 Target Full Sequence	2.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||= targets:43   AACUUUUCUGUCUAAGGUUAGUUU   66 Target Full Sequence	2.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||* targets:1521   AACUUUUCUGUCUAAGGUUAGUUA   1544 Target Full Sequence	2.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
EZ107480.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||* targets:84   AACUUUUCUGUCUAAGGUUAGUUA   107 Target Full Sequence	2.5	TSA: Zea mays contig43138, mRNA sequence	NA	coding protein	psRNATarget
EZ086875.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||||||||||=|||||||* targets:55   AACUUUUCUGUCUAAGGUUAGUUA   78 Target Full Sequence	2.5	TSA: Zea mays contig22521, mRNA sequence	NA	coding protein	psRNATarget
BT062066.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   |||||||*|||||||||||||||| targets:1548   AACUUUUGUGUCUAAAGUUAGUUC   1571 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0211I24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:2427   AACUUUUCUGCCUAAGGUUAGUUC   2450 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:931   AACUUUUCUGCCUAAGGUUAGUUC   954 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:665   AACUUUUCUGCCUAAGGUUAGUUC   688 Target Full Sequence	2.5	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:630   AACUUUUCUGCCUAAGGUUAGUUC   653 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
EU968686.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:647   AACUUUUCUGCCUAAGGUUAGUUC   670 Target Full Sequence	2.5	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ056974.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:165   AACUUUUCUGACUAAGGUUAGUUC   188 Target Full Sequence	2.5	TSA: Zea mays contig58096, mRNA sequence	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:43   AACUUUUCUGCCUAAGGUUAGUUC   66 Target Full Sequence	2.5	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:43   AACUUUUCUGCCUAAGGUUAGUUC   66 Target Full Sequence	2.5	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:43   AACUUUUCUGCCUAAGGUUAGUUC   66 Target Full Sequence	2.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:43   AACUUUUCUGCCUAAGGUUAGUUC   66 Target Full Sequence	2.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:43   AACUUUUCUGCCUAAGGUUAGUUC   66 Target Full Sequence	2.5	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||||||||||*||||=|||||||| targets:43   AACUUUUCUGCCUAAGGUUAGUUC   66 Target Full Sequence	2.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
HI402983.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||*|||||||*||||=|||||||| targets:4   AAAUUUUCUGCCUAAGGUUAGUUC   27 Target Full Sequence	2.5	Sequence 1108 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235113.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||*|||||||*||||=|||||||| targets:4   AAAUUUUCUGCCUAAGGUUAGUUC   27 Target Full Sequence	2.5	Sequence 1108 from Patent EP2985353	NA	coding protein	psRNATarget
JB163444.1	ncRNA:24   UUGAAAAGACAGAUUUCAAUCAAG   1   ||*|||||||*||||=|||||||| targets:4   AAAUUUUCUGCCUAAGGUUAGUUC   27 Target Full Sequence	2.5	Sequence 1108 from Patent EP2559767	NA	coding protein	psRNATarget