Search result

BaseInfo

ncRNA ID	novel_zma_miR308
Species	Zea mays
Class	miRNA
Genome position	Chr5:154152980-154153038 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089712;SRR2089714;SRR2089701;SRR2089706;SRR2089708
Length	24
Mature sequence(if miRNA)	36 - GUGUUUUUUUCGGACACUCGGCAA - 59
Stem-loop(if miRNA)	-GU       U  -              A    GUUUUUU CG GACACUCGGCAAAG A    ||||||| || |||||||||||||| G    CAAAAAA GC CUGUGAGCCGUUUC A CUC       C  A              U
Stem-loop sequence	GUGUUUUUUUCGGACACUCGGCAAAGAAGAUCUUUGCCGAGUGUCACGCAAAAAACCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055423.1	ncRNA:24   AACGGCUCACAGGCUUUUUUUGUG   1   ||||||||||*|||||||||=||| targets:149   UUGCCGAGUGCCCGAAAAAAGCAC   172 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   AACGGCUCACAGGCUUUUUUUGUG   1   ||||||||||*|||||||||=||| targets:149   UUGCCGAGUGCCCGAAAAAAGCAC   172 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   AACGGCUCACAGGCUUUUUUUGUG   1   ||||||||||*|||||||||=||| targets:2168   UUGCCGAGUGCCCGAAAAAAGCAC   2191 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   AACGGCUCACAGGCUUUUUUUGUG   1   ||||||||||*|||||||||=||| targets:2168   UUGCCGAGUGCCCGAAAAAAGCAC   2191 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
XM_008657421.2	ncRNA:24   AACGGCUCACAGGCUUUUUUUGUG   1   |||||||*||*||||||||||||| targets:138   UUGCCGAAUGCCCGAAAAAAACAC   161 Target Full Sequence	2.0	PREDICTED: Zea mays GDSL esterase/lipase At1g28590 (LOC103634831), mRNA	NA	coding protein	psRNATarget