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BaseInfo

ncRNA ID novel_zma_miR305
Species Zea mays
Class miRNA
Genome position Chr5:175915772-175915817 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR1583944;SRR2089715;SRR2287159;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR1583942;SRR1997866;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089706;SRR2089707;SRR2089708
Length 22
Mature sequence(if miRNA) 1 - UGAACACACUGAUUUUCUGGGC - 22
Stem-loop(if miRNA) --         UG   --GG   C
  CCGGAAAGU  GUG    CAG C
  |||||||||  |||    |||
  GGUCUUUUA  CAC    GUU A
CG         GU   ACAA   G
Stem-loop sequence CCGGAAAGUUGGUGGGCAGCCAGUUGAACACACUGAUUUUCUGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU964271.1
ncRNA:22   CGGGUCUUUUAGUCACACAAGU   1
  |=*|||*|||||||*|||||||
targets:407   GUGCAGUAAAUCAGGGUGUUCA   428

2.5 Zea mays clone 277471 mRNA sequence NA coding protein psRNATarget
EU965108.1
ncRNA:22   CGGGUCUUUUAGUCACACAAGU   1
  |=*|||*|||||||*|||||||
targets:763   GUGCAGUAAAUCAGGGUGUUCA   784

2.5 Zea mays clone 283859 mRNA sequence NA coding protein psRNATarget
BT064789.1
ncRNA:22   CGGGUCUUUUAGUCACACAAGU   1
  |=*|||*|||||||*|||||||
targets:878   GUGCAGUAAAUCAGGGUGUUCA   899

2.5 Zea mays full-length cDNA clone ZM_BFb0135G11 mRNA, complete cds NA coding protein psRNATarget
NM_001175304.1
ncRNA:22   CGGGUCUUUUAGUCACACAAGU   1
  |=*|||*|||||||*|||||||
targets:878   GUGCAGUAAAUCAGGGUGUUCA   899

2.5 Zea mays uncharacterized LOC100382572 (cl38706_1), mRNA NA coding protein psRNATarget