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BaseInfo

ncRNA ID novel_zma_miR301
Species Zea mays
Class miRNA
Genome position Chr5:195340961-195341020 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089712;SRR2287160;SRR2287161;SRR2287164;SRR2287165;SRR5451003;SRR5451006;SRR2089701;SRR2089703;SRR2089704;SRR2089706;SRR2089707;SRR2089708
Length 22
Mature sequence(if miRNA) 1 - GGAGGAUAUGAUGUGUAGUCGG - 22
Stem-loop(if miRNA) --   -    GA    A         GGAGGA
  GAU ACAU  AUCA UAUCCUCCA      G
  ||| ||||  |||| |||||||||
  CUG UGUG  UAGU AUAGGAGGU      G
GG   A    --    -         AGGAUA
Stem-loop sequence GAUACAUGAAUCAAUAUCCUCCAGGAGGAGGAUAGGAUGGAGGAUAUGAUGUGUAGUCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020543001.1
ncRNA:22   GGCUGAUGUGUAGUAUAGGAGG   1
  ||||||||||||||||||||=|
targets:509   CCGACUACACAUCAUAUCCUUC   530

1.5 PREDICTED: Zea mays formin-like protein 14 (LOC109941783), mRNA NA coding protein psRNATarget
XM_008655560.1
ncRNA:22   GGCUGAUGUGUAGUAUAGGAGG   1
  ||||*|||||||||||||||||
targets:608   CCGAGUACACAUCAUAUCCUCC   629

1.0 PREDICTED: Zea mays WAS/WASL-interacting protein family member 1-like (LOC103633895), mRNA NA coding protein psRNATarget
XM_020552263.1
ncRNA:22   GGCUGAUGUGUAGUAUAGGAGG   1
  |=||||||||*|||||||||||
targets:383   CUGACUACACUUCAUAUCCUCC   404

1.5 PREDICTED: Zea mays extensin-like (LOC109945883), mRNA NA coding protein psRNATarget
XM_020538148.1
ncRNA:22   GGCUGAUGUGUAGUAUAGGAGG   1
  |=||||||||*|||||||||||
targets:383   CUGACUACACUUCAUAUCCUCC   404

1.5 PREDICTED: Zea mays extensin-like (LOC109939808), mRNA NA coding protein psRNATarget