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BaseInfo

ncRNA ID	osa-miR1319b
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:23399893-23400011 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	32 - CCUUUAAUAUAUUAUAGGUGUCGG - 55
Stem-loop(if miRNA)	U         C       U    A                AAA AUAGGUGCCGGUUUUU AAAAAAACC GACACCU UAAU UAUUAUAGGUGUCGGU   U |||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||   U UGUCCACGGCCAAAAA UUUUUUUGG CUGUGGA AUUA AUAAUAUCCACGGCUA   A                 -         -       U    A                AAA
Stem-loop sequence	AUAGGUGCCGGUUUUUUAAAAAAACCCGACACCUUUAAUAUAUUAUAGGUGUCGGUAAAUUAAAAAUCGGCACCUAUAAUAAAUUAUAGGUGUCGGUUUUUUUAAAAACCGGCACCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK070414.1	ncRNA:24   GGCUGUGGAUAUUAUAUAAUUUCC   1   ||||||||||||||||||||*||* targets:1141   CCGACACCUAUAAUAUAUUACAGA   1164 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023053H09, full insert sequence	NA	coding protein	psRNATarget
AK070414.1	ncRNA:24   GGCUGUGGAUAUUAUAUAAUUUCC   1   |||=|||=||||||||||||*||| targets:1100   CCGGCACUUAUAAUAUAUUAUAGG   1123 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023053H09, full insert sequence	NA	coding protein	psRNATarget
AB510478.1	ncRNA:24   GGCUGUGGAUAUUAUAUAAUUUCC   1   ||*|=||=|||||||||||||||| targets:252   CCUAUACUUAUAAUAUAUUAAAGG   275 Target Full Sequence	1.0	Oryza sativa Indica Group Snorkel 1 gene for Ethylene response factor, complete cds, cultivar: C9285	NA	coding protein	psRNATarget
XM_015773630.1	ncRNA:24   GGCUGUGGAUAUUAUAUAAUUUCC   1   ||*|||=|||||||||||||*||| targets:1599   CCAACAUCUAUAAUAUAUUAUAGG   1622 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650-like (LOC107278316), mRNA	GDSL esterase/lipase At1g28650-like(LOC107278316)	coding protein	psRNATarget
AK288922.1	ncRNA:24   GGCUGUGGAUAUUAUAUAAUUUCC   1   ||*|||=|||||||||||||*||| targets:1074   CCAACAUCUAUAAUAUAUUAUAGG   1097 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081M23, full insert sequence	NA	coding protein	psRNATarget
XM_015773629.1	ncRNA:24   GGCUGUGGAUAUUAUAUAAUUUCC   1   ||*|||=|||||||||||||*||| targets:879   CCAACAUCUAUAAUAUAUUAUAGG   902 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650 (LOC4332910), mRNA	GDSL esterase/lipase At1g28650(LOC4332910)	coding protein	psRNATarget
AK069235.1	ncRNA:24   GGCUGUGGAUAUUAUAUAAUUUCC   1   |=|=*|||||||||||||||*||| targets:3420   CUGGGACCUAUAAUAUAUUAUAGG   3443 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023010D04, full insert sequence	NA	coding protein	psRNATarget
AK288262.1	ncRNA:24   GGCUGUGGAUAUUAUAUAAUUUCC   1   =****|||||||||||||||*||| targets:311   UAAUAACCUAUAAUAUAUUAUAGG   334 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090016B02, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).